SMTL ID : 8k6i.1

LnaB-Actin-PRUb ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

hetero-2-2-2-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain C: K.181, R.183, S.243, G.244, T.245, H.287 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.183, C:G.244, C:T.245 Salt bridges: C:K.181, C:H.287

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.2: 10 residues within 4Å: Chain D: V.161, N.164, D.165, R.183, S.243, G.244, T.245, H.287 Chain E: R.44, R.74 8 PLIP interactions: 7 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:N.164, D:D.165, D:Y.178, D:T.245, E:R.44 Salt bridges: D:K.172, D:R.183, D:H.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T.T. et al., Complex structure of Legionella effector LnaB with host Actin and PR-Ub. To Be Published

Release Date

2025-01-29

Peptides

Actin gamma 1: AB
Legionella effector LnaB: CD
ubiquitin: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Actin gamma 1

Legionella effector LnaB

ubiquitin

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