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SMTL ID : 8k6v.1

LnaB-Actin-PRUb ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1:

21 residues within 4Å:

Chain A: D.11, G.13, S.14, G.15, M.16, K.18, Q.137, D.154, S.155, G.156, D.157, G.182, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336

15 PLIP interactions:

15 interactions with chain A

Hydrogen bonds: A:S.14, A:G.15, A:M.16, A:K.18, A:D.154, A:D.157, A:R.210, A:K.213, A:E.214, A:G.302, A:T.303
Water bridges: A:D.11, A:N.12
Salt bridges: A:K.18
pi-Stacking: A:Y.306

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.2:

19 residues within 4Å:

Chain B: L.158, V.161, N.164, D.165, Y.178, K.181, R.183, A.240, L.242, S.243, G.244, T.245, Y.281, Y.286, H.287
Chain C: R.42, Q.49, R.72, R.74

17 PLIP interactions:

13 interactions with chain B, 4 interactions with chain C

Hydrogen bonds: B:N.164, B:D.165, B:Y.178, B:L.242, B:G.244, B:T.245, B:Y.281, B:Y.286, C:Q.49
Salt bridges: B:K.181, B:R.183, B:R.183, B:H.287, B:H.287, C:R.72, C:R.74
Water bridges: C:R.42

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chen, T.T. et al., Complex structure of Legionella effector LnaB with host Actin and ADPR-Ub. To Be Published

Release Date

2025-01-29

Peptides

Actin gamma 1: A
LnaB: B
Ubiquitin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Actin gamma 1

LnaB

Ubiquitin

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