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SMTL ID : 8k6f.1

LnaB-Actin-PRUb ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.41 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1:	22 residues within 4Å: Chain A: D.11, G.13, S.14, G.15, M.16, K.18, Q.137, D.154, S.155, G.156, D.157, G.182, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336, V.339 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.14, A:G.15, A:M.16, A:D.154, A:D.154, A:D.157, A:D.157, A:K.213, A:E.214, A:G.302 Salt bridges: A:K.18, A:K.18, A:K.18
ATP.2:	19 residues within 4Å: Chain B: D.11, G.13, S.14, G.15, M.16, K.18, Q.137, D.154, G.156, D.157, R.210, K.213, E.214, G.302, T.303, M.305, Y.306, K.336, V.339 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.14, B:G.15, B:M.16, B:Q.137, B:D.154, B:D.157, B:K.213, B:E.214, B:E.214, B:E.214, B:K.336 Salt bridges: B:K.18, B:K.18, B:K.18, B:K.336 pi-Cation interactions: B:K.213

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.3:

14 residues within 4Å:

Chain D: N.164, D.165, Y.178, K.181, R.183, A.240, L.242, S.243, G.244, T.245, H.287
Chain E: R.42, R.72, R.74

14 PLIP interactions:

11 interactions with chain D, 3 interactions with chain E

Hydrogen bonds: D:N.164, D:D.165, D:Y.178, D:R.183, D:R.183, D:L.242, D:S.243, D:G.244, D:T.245, E:R.42, E:R.74
Salt bridges: D:K.181, D:H.287, E:R.42

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chen, T.T. et al., Complex structure of Legionella effector LnaB with host Actin and PR-Ub. To Be Published

Release Date

2025-01-29

Peptides

Actin gamma 1: AB
Legionella effector LnaB: CD
Ubiquitin: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Actin gamma 1

Legionella effector LnaB

Ubiquitin

Toggle Identical (EF)

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