SMTL ID : 8khn.1

Crystal structure of human methionine aminopeptidase 12 (MAP12) in complex with two cobalt ions

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 6 residues within 4Å: Chain A: D.167, H.230, T.260, E.262, E.293 Ligands: CO.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.167, A:H.230, A:E.262, A:E.293, H2O.8 CO.2: 5 residues within 4Å: Chain A: D.156, T.158, D.167, E.293 Ligands: CO.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.156, A:D.167, A:E.293, H2O.8, H2O.8

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 5 residues within 4Å: Chain A: L.32, K.273, S.283, L.284, N.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.273 Water bridges: A:K.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., Structural insights into N-terminal methionine cleavage by the human mitochondrial methionine aminopeptidase, MetAP1D. Sci Rep (2023)

Release Date

2024-01-24

Peptides

Methionine aminopeptidase 1D, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 1D, mitochondrial

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