SMTL ID : 8oiq.1

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-6-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x C- C- A: E-site tRNA(Non-functional Binders)
205 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
30 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
1 x PHE: PHENYLALANINE(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x FME: N-FORMYLMETHIONINE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Saurer, M. et al., Molecular basis of translation termination at noncanonical stop codons in human mitochondria. Science (2023)
Release Date
2023-06-14
Peptides
Mitochondrial ribosomal protein L12: ABCDEF
uL22m: I
39S ribosomal protein L23, mitochondrial: J
uL24m: K
Mitochondrial ribosomal protein L27: L
Mitochondrial ribosomal protein L28: M
Mitochondrial ribosomal protein L47: N
uL30m: O
Mitochondrial ribosomal protein L32: P
bL33m: Q
Mitochondrial ribosomal protein L34: R
39S ribosomal protein L35, mitochondrial: S
Mitochondrial ribosomal protein L2: T
ICT1: U
Mitochondrial ribosomal protein L4: V
Mitochondrial ribosomal protein L9: W
Mitochondrial ribosomal protein L10: X
Mitochondrial ribosomal protein L11: Y
39S ribosomal protein L13, mitochondrial: Z
Mitochondrial ribosomal protein L14: 0
39S ribosomal protein L15, mitochondrial: 1
uL16m: 2
bL17m: 3
Mitochondrial ribosomal protein L18: 4
39S ribosomal protein L19, mitochondrial: 5
Mitochondrial ribosomal protein L20: 6
Mitochondrial ribosomal protein L21: 7
39S ribosomal protein L52, mitochondrial: 8
Mitochondrial ribosomal protein L53: 9
mL54: a
bL31m: b
Mitochondrial ribosomal protein L57: c
mL62 (ICT1): d
mL64: e
Mitochondrial ribosomal protein S18A: f
39S ribosomal protein S30, mitochondrial: g
39S ribosomal protein L1, mitochondrial: h
Ribosomal protein: i
Mitochondrial ribosomal protein L37: j
Mitochondrial ribosomal protein L38: k
Mitochondrial ribosomal protein L39: l
Mitochondrial ribosomal protein L40: m
Mitochondrial ribosomal protein L41: n
mL42: o
39S ribosomal protein L43, mitochondrial isoform X2: p
mL44: q
Mitochondrial ribosomal protein L45: r
Mitochondrial ribosomal protein L46: s
39S ribosomal protein L48, mitochondrial: t
39S ribosomal protein L49, mitochondrial: u
Mitochondrial ribosomal protein L50: v
Mitochondrial ribosomal protein L51: w
Peptide chain release factor 1, mitochondrial: y
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B1
B
B2
C
B3
D
B4
E
B5
F
B6
I
BA
J
BB
K
BC
L
BD
M
BE
N
BF
O
BG
P
BH
Q
BI
R
BJ
S
BK
T
BL
U
BM
V
BN
W
BO
X
BP
Y
BQ
Z
BR
0
BS
1
BT
2
BU
3
BV
4
BW
5
BX
6
BY
7
BZ
8
Ba
9
Bb
a
Bc
b
Bd
c
Be
d
Bf
e
Bg
f
Bh
g
Bi
h
Bj
i
Bl
j
Bm
k
Bn
l
Bo
m
Bp
n
Bq
o
Br
p
Bs
q
Bt
r
Bu
s
Bv
t
Bw
u
Bx
v
By
w
Bz
y
Aa

Mitochondrial ribosomal protein L12

Toggle Identical (BDE)

uL22m

39S ribosomal protein L23, mitochondrial

uL24m

Mitochondrial ribosomal protein L27

Mitochondrial ribosomal protein L28

Mitochondrial ribosomal protein L47

uL30m

Mitochondrial ribosomal protein L32

bL33m

Mitochondrial ribosomal protein L34

39S ribosomal protein L35, mitochondrial

Mitochondrial ribosomal protein L2

ICT1

Mitochondrial ribosomal protein L4

Mitochondrial ribosomal protein L9

Mitochondrial ribosomal protein L10

Mitochondrial ribosomal protein L11

39S ribosomal protein L13, mitochondrial

Mitochondrial ribosomal protein L14

39S ribosomal protein L15, mitochondrial

uL16m

bL17m

Mitochondrial ribosomal protein L18

39S ribosomal protein L19, mitochondrial

Mitochondrial ribosomal protein L20

Mitochondrial ribosomal protein L21

39S ribosomal protein L52, mitochondrial

Mitochondrial ribosomal protein L53

mL54

bL31m

Mitochondrial ribosomal protein L57

mL62 (ICT1)

mL64

Mitochondrial ribosomal protein S18A

39S ribosomal protein S30, mitochondrial

39S ribosomal protein L1, mitochondrial

Ribosomal protein

Mitochondrial ribosomal protein L37

Mitochondrial ribosomal protein L38

Mitochondrial ribosomal protein L39

Mitochondrial ribosomal protein L40

Mitochondrial ribosomal protein L41

mL42

39S ribosomal protein L43, mitochondrial isoform X2

mL44

Mitochondrial ribosomal protein L45

Mitochondrial ribosomal protein L46

39S ribosomal protein L48, mitochondrial

39S ribosomal protein L49, mitochondrial

Mitochondrial ribosomal protein L50

Mitochondrial ribosomal protein L51

Peptide chain release factor 1, mitochondrial

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4ce4.1 | 4v19.1 | 4v1a.1 | 5aj4.31 | 5aj4.32 | 5aj4.35 | 5aj4.37 | 5aj4.38 | 5aj4.39 | 5aj4.40 | 5aj4.41 | 5aj4.43 | 5aj4.44 | 5aj4.46 | 5aj4.49 | 5aj4.50 | 5aj4.51 | 5aj4.54 | 5aj4.55 | 5aj4.56 | 5aj4.57 | 5aj4.58 | 5aj4.60 | 5aj4.61 | 5aj4.63 | 5aj4.65 | 5aj4.66 | 5aj4.68 | 5aj4.70 | 5aj4.74  more...