SMTL ID : 8oj5.1

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

220 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: C.14, A.15 No protein-ligand interaction detected (PLIP) MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: A.38, G.40, C.41 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain A: G.40, C.41, U.3915, G.3916 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain A: G.48, U.96, G.292 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain A: A.51 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain A: A.61 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain A: A.64 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain A: C.1386 Chain W: E.147 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain A: C.112, C.155, G.156 No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Chain A: G.240 No protein-ligand interaction detected (PLIP) MG.12: 2 residues within 4Å: Chain A: G.230, U.231 No protein-ligand interaction detected (PLIP) MG.13: 2 residues within 4Å: Chain A: G.229, A.235 No protein-ligand interaction detected (PLIP) MG.14: 3 residues within 4Å: Chain A: G.356, C.358 Chain J: G.99 No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain A: G.356, A.359 Ligands: MG.16 No protein-ligand interaction detected (PLIP) MG.16: 4 residues within 4Å: Chain A: C.358, A.359, A.377 Ligands: MG.15 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain A: G.369, G.2793 No protein-ligand interaction detected (PLIP) MG.18: 4 residues within 4Å: Chain A: A.410, G.415, U.416, G.2331 No protein-ligand interaction detected (PLIP) MG.19: 4 residues within 4Å: Chain A: C.414, G.415, U.416, G.417 No protein-ligand interaction detected (PLIP) MG.20: 5 residues within 4Å: Chain A: G.423, U.424 Chain C: A.9, G.10, C.11 No protein-ligand interaction detected (PLIP) MG.21: 2 residues within 4Å: Chain A: A.4533, G.4534 No protein-ligand interaction detected (PLIP) MG.22: 3 residues within 4Å: Chain A: G.1633, G.4534, A.4535 No protein-ligand interaction detected (PLIP) MG.23: 3 residues within 4Å: Chain A: A.1632, G.1633, A.4535 No protein-ligand interaction detected (PLIP) MG.24: 3 residues within 4Å: Chain A: G.1316, G.1658, G.2348 No protein-ligand interaction detected (PLIP) MG.25: 2 residues within 4Å: Chain A: A.1523, G.1651 No protein-ligand interaction detected (PLIP) MG.26: 2 residues within 4Å: Chain A: G.3907, G.4448 No protein-ligand interaction detected (PLIP) MG.27: 3 residues within 4Å: Chain A: U.1656, A.4394 Ligands: MG.40 No protein-ligand interaction detected (PLIP) MG.28: 3 residues within 4Å: Chain A: A.3902, U.4450, G.4451 No protein-ligand interaction detected (PLIP) MG.29: 3 residues within 4Å: Chain A: U.4521, G.4522, A.4523 No protein-ligand interaction detected (PLIP) MG.30: 2 residues within 4Å: Chain A: C.4398, U.4452 No protein-ligand interaction detected (PLIP) MG.31: 2 residues within 4Å: Chain A: A.3903, G.4451 No protein-ligand interaction detected (PLIP) MG.32: 3 residues within 4Å: Chain A: A.3903, G.3904, G.4451 No protein-ligand interaction detected (PLIP) MG.33: 3 residues within 4Å: Chain A: U.4403, U.4404, U.4436 No protein-ligand interaction detected (PLIP) MG.34: 4 residues within 4Å: Chain A: G.1316, U.1317, A.1322 Chain a: D.42 1 PLIP interactions: 1 interactions with chain a Metal complexes: a:D.42 MG.35: 4 residues within 4Å: Chain A: A.1322, C.1881 Chain a: I.41, D.42 No protein-ligand interaction detected (PLIP) MG.36: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.37: 1 residues within 4Å: Chain A: C.1678 No protein-ligand interaction detected (PLIP) MG.38: 3 residues within 4Å: Chain A: U.1656, G.4392, G.4393 No protein-ligand interaction detected (PLIP) MG.39: 1 residues within 4Å: Chain A: C.1635 No protein-ligand interaction detected (PLIP) MG.40: 5 residues within 4Å: Chain A: C.1655, U.1656, A.1679, A.4394 Ligands: MG.27 No protein-ligand interaction detected (PLIP) MG.41: 3 residues within 4Å: Chain A: G.1854, G.4393, A.4394 No protein-ligand interaction detected (PLIP) MG.42: 5 residues within 4Å: Chain A: G.4393, A.4394, C.4443, C.4444, U.4445 No protein-ligand interaction detected (PLIP) MG.43: 3 residues within 4Å: Chain A: C.1665, A.2279, G.2280 No protein-ligand interaction detected (PLIP) MG.44: 1 residues within 4Å: Chain A: A.2282 No protein-ligand interaction detected (PLIP) MG.45: 4 residues within 4Å: Chain 6: G.18 Chain A: A.1850, G.2283, G.2284 1 PLIP interactions: 1 interactions with chain 6 Metal complexes: 6:G.18 MG.46: 3 residues within 4Å: Chain A: U.35, G.4187, U.4188 No protein-ligand interaction detected (PLIP) MG.47: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.48: 2 residues within 4Å: Chain A: U.45, U.291 No protein-ligand interaction detected (PLIP) MG.49: 2 residues within 4Å: Chain A: U.1381, G.1382 No protein-ligand interaction detected (PLIP) MG.50: 3 residues within 4Å: Chain A: U.316, A.317, A.318 No protein-ligand interaction detected (PLIP) MG.51: 1 residues within 4Å: Chain A: G.1335 No protein-ligand interaction detected (PLIP) MG.52: 3 residues within 4Å: Chain A: A.410, G.2330, G.2331 No protein-ligand interaction detected (PLIP) MG.53: 1 residues within 4Å: Chain A: G.153 No protein-ligand interaction detected (PLIP) MG.54: 2 residues within 4Å: Chain A: C.1898, G.2278 No protein-ligand interaction detected (PLIP) MG.55: 2 residues within 4Å: Chain A: G.1887, G.1890 No protein-ligand interaction detected (PLIP) MG.56: 2 residues within 4Å: Chain A: A.1934, G.2058 No protein-ligand interaction detected (PLIP) MG.57: 3 residues within 4Å: Chain A: A.1888, U.1889, G.1890 No protein-ligand interaction detected (PLIP) MG.58: 3 residues within 4Å: Chain A: C.1915, G.1916, A.1917 No protein-ligand interaction detected (PLIP) MG.59: 1 residues within 4Å: Chain A: G.1895 No protein-ligand interaction detected (PLIP) MG.60: 5 residues within 4Å: Chain A: A.1345, U.1511, G.1512, C.1848, U.1849 No protein-ligand interaction detected (PLIP) MG.61: 5 residues within 4Å: Chain A: U.1578, C.1579, C.1610, C.1611, G.1612 No protein-ligand interaction detected (PLIP) MG.62: 2 residues within 4Å: Chain A: C.1580, C.1610 No protein-ligand interaction detected (PLIP) MG.63: 3 residues within 4Å: Chain A: U.3637, G.3638, U.3639 No protein-ligand interaction detected (PLIP) MG.64: 3 residues within 4Å: Chain A: A.3646, A.3647, A.3828 No protein-ligand interaction detected (PLIP) MG.65: 3 residues within 4Å: Chain A: A.3830, U.3831, A.4553 No protein-ligand interaction detected (PLIP) MG.66: 2 residues within 4Å: Chain A: C.3636, A.3648 No protein-ligand interaction detected (PLIP) MG.67: 3 residues within 4Å: Chain A: U.1588, U.3645, A.3646 No protein-ligand interaction detected (PLIP) MG.68: 3 residues within 4Å: Chain A: A.3642, U.3644, U.3645 No protein-ligand interaction detected (PLIP) MG.69: 2 residues within 4Å: Chain A: G.3815, G.4538 No protein-ligand interaction detected (PLIP) MG.70: 3 residues within 4Å: Chain A: G.3654, A.3692, U.3693 No protein-ligand interaction detected (PLIP) MG.71: 2 residues within 4Å: Chain A: G.3689, U.3690 No protein-ligand interaction detected (PLIP) MG.72: 2 residues within 4Å: Chain A: G.2320 Chain a: T.17 No protein-ligand interaction detected (PLIP) MG.73: 3 residues within 4Å: Chain A: U.1671, U.1672, U.1673 No protein-ligand interaction detected (PLIP) MG.74: 1 residues within 4Å: Chain A: C.1678 No protein-ligand interaction detected (PLIP) MG.75: 2 residues within 4Å: Chain A: A.4214, C.4215 No protein-ligand interaction detected (PLIP) MG.76: 1 residues within 4Å: Chain A: G.4216 No protein-ligand interaction detected (PLIP) MG.77: 2 residues within 4Å: Chain A: G.1734, U.1735 No protein-ligand interaction detected (PLIP) MG.78: 2 residues within 4Å: Chain A: C.2392, U.2819 No protein-ligand interaction detected (PLIP) MG.79: 1 residues within 4Å: Chain A: A.2395 No protein-ligand interaction detected (PLIP) MG.80: 1 residues within 4Å: Chain A: C.2393 No protein-ligand interaction detected (PLIP) MG.81: 3 residues within 4Å: Chain A: C.1327, C.4447, G.4448 No protein-ligand interaction detected (PLIP) MG.82: 2 residues within 4Å: Chain A: G.1329, A.3865 No protein-ligand interaction detected (PLIP) MG.83: 2 residues within 4Å: Chain A: A.1333, A.1334 No protein-ligand interaction detected (PLIP) MG.84: 3 residues within 4Å: Chain A: A.1337, G.2343, U.2344 No protein-ligand interaction detected (PLIP) MG.85: 3 residues within 4Å: Chain A: G.2402, A.2783, C.2784 No protein-ligand interaction detected (PLIP) MG.86: 3 residues within 4Å: Chain A: G.2528, A.2529, C.2784 No protein-ligand interaction detected (PLIP) MG.87: 3 residues within 4Å: Chain A: C.2410, C.2411, A.2428 No protein-ligand interaction detected (PLIP) MG.88: 2 residues within 4Å: Chain A: C.2422, A.2423 No protein-ligand interaction detected (PLIP) MG.89: 2 residues within 4Å: Chain A: A.2381, A.2382 No protein-ligand interaction detected (PLIP) MG.90: 1 residues within 4Å: Chain A: A.2370 No protein-ligand interaction detected (PLIP) MG.91: 2 residues within 4Å: Chain A: A.2429, C.2430 No protein-ligand interaction detected (PLIP) MG.92: 3 residues within 4Å: Chain 3: T.126 Chain A: A.2438, U.2782 No protein-ligand interaction detected (PLIP) MG.93: 1 residues within 4Å: Chain A: C.2792 No protein-ligand interaction detected (PLIP) MG.94: 4 residues within 4Å: Chain A: A.1599, A.1600, G.2793, C.2794 No protein-ligand interaction detected (PLIP) MG.95: 4 residues within 4Å: Chain A: A.2845, G.2847, G.2848, G.3839 No protein-ligand interaction detected (PLIP) MG.96: 2 residues within 4Å: Chain A: U.4632, G.4633 No protein-ligand interaction detected (PLIP) MG.97: 4 residues within 4Å: Chain A: G.955, A.956, G.957, G.958 No protein-ligand interaction detected (PLIP) MG.98: 2 residues within 4Å: Chain A: G.1399, G.1419 No protein-ligand interaction detected (PLIP) MG.99: 2 residues within 4Å: Chain A: G.1592, U.4526 No protein-ligand interaction detected (PLIP) MG.100: 5 residues within 4Å: Chain A: C.1589, U.3645, A.3646, A.4553, G.4554 No protein-ligand interaction detected (PLIP) MG.101: 2 residues within 4Å: Chain A: C.2856, A.2857 No protein-ligand interaction detected (PLIP) MG.102: 2 residues within 4Å: Chain A: U.1636, U.1639 No protein-ligand interaction detected (PLIP) MG.103: 1 residues within 4Å: Chain A: A.1737 No protein-ligand interaction detected (PLIP) MG.104: 1 residues within 4Å: Chain A: G.1933 No protein-ligand interaction detected (PLIP) MG.105: 2 residues within 4Å: Chain A: U.4463, A.4464 No protein-ligand interaction detected (PLIP) MG.106: 1 residues within 4Å: Chain A: U.3851 No protein-ligand interaction detected (PLIP) MG.107: 3 residues within 4Å: Chain A: A.2363, A.3852, U.3853 No protein-ligand interaction detected (PLIP) MG.108: 2 residues within 4Å: Chain A: G.2514, G.2516 No protein-ligand interaction detected (PLIP) MG.109: 3 residues within 4Å: Chain A: A.2512, A.2513 Chain c: L.11 No protein-ligand interaction detected (PLIP) MG.110: 2 residues within 4Å: Chain A: C.2446, G.2510 No protein-ligand interaction detected (PLIP) MG.111: 2 residues within 4Å: Chain A: U.2444, G.2510 No protein-ligand interaction detected (PLIP) MG.112: 2 residues within 4Å: Chain A: A.4648, G.4650 No protein-ligand interaction detected (PLIP) MG.113: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.114: 5 residues within 4Å: Chain A: G.2700, U.2701, G.2714, G.2715, C.2716 No protein-ligand interaction detected (PLIP) MG.115: 3 residues within 4Å: Chain A: A.2529, U.2530, C.2531 No protein-ligand interaction detected (PLIP) MG.116: 3 residues within 4Å: Chain A: A.2789, G.2827, U.2828 No protein-ligand interaction detected (PLIP) MG.117: 2 residues within 4Å: Chain A: C.2797, G.2799 No protein-ligand interaction detected (PLIP) MG.118: 2 residues within 4Å: Chain A: A.2845, G.2846 No protein-ligand interaction detected (PLIP) MG.119: 6 residues within 4Å: Chain A: A.2849, A.2850, G.2851, U.2852, G.2855 Ligands: MG.120 No protein-ligand interaction detected (PLIP) MG.120: 5 residues within 4Å: Chain A: A.2850, G.2851, U.2852, A.4496 Ligands: MG.119 No protein-ligand interaction detected (PLIP) MG.121: 2 residues within 4Å: Chain A: U.4551, U.4552 No protein-ligand interaction detected (PLIP) MG.122: 3 residues within 4Å: Chain A: U.3832, C.3833, U.4497 No protein-ligand interaction detected (PLIP) MG.123: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.124: 2 residues within 4Å: Chain A: A.3747, A.3817 No protein-ligand interaction detected (PLIP) MG.125: 4 residues within 4Å: Chain A: C.3701, U.3704, G.3705, U.3745 No protein-ligand interaction detected (PLIP) MG.126: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.127: 2 residues within 4Å: Chain A: G.4180, U.4181 No protein-ligand interaction detected (PLIP) MG.128: 1 residues within 4Å: Chain A: C.3810 No protein-ligand interaction detected (PLIP) MG.129: 2 residues within 4Å: Chain A: C.3782, G.3787 No protein-ligand interaction detected (PLIP) MG.130: 1 residues within 4Å: Chain A: A.3783 No protein-ligand interaction detected (PLIP) MG.131: 1 residues within 4Å: Chain A: A.3871 No protein-ligand interaction detected (PLIP) MG.132: 3 residues within 4Å: Chain A: G.3907, G.4393, C.4447 No protein-ligand interaction detected (PLIP) MG.133: 3 residues within 4Å: Chain A: U.3920, G.4184 Chain H: P.206 No protein-ligand interaction detected (PLIP) MG.134: 2 residues within 4Å: Chain A: A.3923, C.3924 No protein-ligand interaction detected (PLIP) MG.135: 6 residues within 4Å: Chain A: A.4212, U.4218, A.4219, A.4220 Chain Z: T.2, N.3 No protein-ligand interaction detected (PLIP) MG.136: 4 residues within 4Å: Chain A: G.4236, G.4328, G.4329, G.4330 No protein-ligand interaction detected (PLIP) MG.137: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.138: 3 residues within 4Å: Chain A: C.4443, U.4445, U.4446 No protein-ligand interaction detected (PLIP) MG.139: 2 residues within 4Å: Chain A: U.4404, U.4436 No protein-ligand interaction detected (PLIP) MG.140: 1 residues within 4Å: Chain A: U.4406 No protein-ligand interaction detected (PLIP) MG.141: 1 residues within 4Å: Chain A: G.4416 No protein-ligand interaction detected (PLIP) MG.142: 2 residues within 4Å: Chain A: A.4479, A.4480 No protein-ligand interaction detected (PLIP) MG.143: 3 residues within 4Å: Chain A: G.4489, C.4490, A.4589 No protein-ligand interaction detected (PLIP) MG.144: 2 residues within 4Å: Chain A: G.4514, G.4515 No protein-ligand interaction detected (PLIP) MG.145: 3 residues within 4Å: Chain A: A.4385, U.4531, U.4532 No protein-ligand interaction detected (PLIP) MG.146: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.147: 2 residues within 4Å: Chain A: G.4658, G.4659 No protein-ligand interaction detected (PLIP) MG.148: 3 residues within 4Å: Chain A: U.4627, A.4665 Chain I: K.373 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:K.373 MG.149: 1 residues within 4Å: Chain A: A.4707 No protein-ligand interaction detected (PLIP) MG.150: 1 residues within 4Å: Chain A: A.4705 No protein-ligand interaction detected (PLIP) MG.151: 1 residues within 4Å: Chain A: C.4698 No protein-ligand interaction detected (PLIP) MG.152: 4 residues within 4Å: Chain A: C.1675, C.4375, A.4376, G.4377 No protein-ligand interaction detected (PLIP) MG.153: 2 residues within 4Å: Chain A: C.3909, C.3910 No protein-ligand interaction detected (PLIP) MG.154: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.155: 3 residues within 4Å: Chain A: C.1077, C.1216, G.1217 No protein-ligand interaction detected (PLIP) MG.156: 1 residues within 4Å: Chain A: A.932 No protein-ligand interaction detected (PLIP) MG.157: 2 residues within 4Å: Chain A: A.1621, U.1622 No protein-ligand interaction detected (PLIP) MG.158: 4 residues within 4Å: Chain A: U.1339, G.1516, A.1518, C.1519 No protein-ligand interaction detected (PLIP) MG.159: 1 residues within 4Å: Chain A: G.1587 No protein-ligand interaction detected (PLIP) MG.160: 4 residues within 4Å: Chain A: G.1624, G.1626, U.1636, C.1640 No protein-ligand interaction detected (PLIP) MG.161: 2 residues within 4Å: Chain A: C.3782, C.3808 No protein-ligand interaction detected (PLIP) MG.162: 1 residues within 4Å: Chain A: A.1891 No protein-ligand interaction detected (PLIP) MG.163: 2 residues within 4Å: Chain A: A.3630, U.3631 No protein-ligand interaction detected (PLIP) MG.164: 1 residues within 4Å: Chain A: G.4247 No protein-ligand interaction detected (PLIP) MG.165: 3 residues within 4Å: Chain A: C.2365, U.3851, A.3852 No protein-ligand interaction detected (PLIP) MG.166: 1 residues within 4Å: Chain A: G.1681 No protein-ligand interaction detected (PLIP) MG.167: 1 residues within 4Å: Chain A: G.4623 No protein-ligand interaction detected (PLIP) MG.168: 3 residues within 4Å: Chain A: C.1857, C.1870, A.1871 No protein-ligand interaction detected (PLIP) MG.169: 3 residues within 4Å: Chain A: G.2416, U.2425, U.2426 No protein-ligand interaction detected (PLIP) MG.170: 4 residues within 4Å: Chain A: U.4312, G.4331, C.4332, C.4333 No protein-ligand interaction detected (PLIP) MG.171: 3 residues within 4Å: Chain A: C.3701, A.3702, G.3703 No protein-ligand interaction detected (PLIP) MG.172: 1 residues within 4Å: Chain A: U.1364 No protein-ligand interaction detected (PLIP) MG.173: 2 residues within 4Å: Chain A: A.243, G.244 No protein-ligand interaction detected (PLIP) MG.174: 2 residues within 4Å: Chain A: G.1353, U.1356 No protein-ligand interaction detected (PLIP) MG.175: 1 residues within 4Å: Chain A: G.1466 No protein-ligand interaction detected (PLIP) MG.176: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.177: 3 residues within 4Å: Chain A: G.2503, C.2504, C.2505 No protein-ligand interaction detected (PLIP) MG.178: 1 residues within 4Å: Chain A: G.4650 No protein-ligand interaction detected (PLIP) MG.179: 2 residues within 4Å: Chain A: G.4659, G.4660 No protein-ligand interaction detected (PLIP) MG.180: 3 residues within 4Å: Chain A: A.2642, G.2643, G.2644 No protein-ligand interaction detected (PLIP) MG.181: 1 residues within 4Å: Chain A: G.2677 No protein-ligand interaction detected (PLIP) MG.182: 3 residues within 4Å: Chain A: G.2888, G.2889, G.3614 No protein-ligand interaction detected (PLIP) MG.183: 2 residues within 4Å: Chain A: A.3662, A.3663 No protein-ligand interaction detected (PLIP) MG.184: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.185: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.186: 3 residues within 4Å: Chain A: U.36, U.37, C.41 No protein-ligand interaction detected (PLIP) MG.187: 2 residues within 4Å: Chain A: C.3683 Chain H: P.151 No protein-ligand interaction detected (PLIP) MG.188: 2 residues within 4Å: Chain A: A.2349, C.2351 No protein-ligand interaction detected (PLIP) MG.189: 3 residues within 4Å: Chain A: C.1367, C.1369, A.1371 No protein-ligand interaction detected (PLIP) MG.190: 2 residues within 4Å: Chain A: G.4322, A.4324 No protein-ligand interaction detected (PLIP) MG.191: 1 residues within 4Å: Chain A: A.4691 No protein-ligand interaction detected (PLIP) MG.192: 2 residues within 4Å: Chain A: A.1871, C.4444 No protein-ligand interaction detected (PLIP) MG.193: 2 residues within 4Å: Chain A: A.65, U.327 No protein-ligand interaction detected (PLIP) MG.194: 1 residues within 4Å: Chain A: A.2697 No protein-ligand interaction detected (PLIP) MG.195: 2 residues within 4Å: Chain A: C.4308, G.4309 No protein-ligand interaction detected (PLIP) MG.196: 2 residues within 4Å: Chain A: G.3743, G.3744 No protein-ligand interaction detected (PLIP) MG.197: 4 residues within 4Å: Chain A: A.3635, A.3692, U.3693, G.3823 No protein-ligand interaction detected (PLIP) MG.198: 2 residues within 4Å: Chain A: U.1536, A.1537 No protein-ligand interaction detected (PLIP) MG.199: 2 residues within 4Å: Chain A: G.2799, G.2800 No protein-ligand interaction detected (PLIP) MG.200: 3 residues within 4Å: Chain A: U.1317, C.1318, G.1657 No protein-ligand interaction detected (PLIP) MG.201: 2 residues within 4Å: Chain A: U.3790, C.3791 No protein-ligand interaction detected (PLIP) MG.202: 4 residues within 4Å: Chain A: U.4210, C.4211, G.4222 Chain Z: N.3 No protein-ligand interaction detected (PLIP) MG.203: 2 residues within 4Å: Chain A: A.1858, G.1869 No protein-ligand interaction detected (PLIP) MG.204: 4 residues within 4Å: Chain A: A.418, A.419 Chain C: U.14, G.15 No protein-ligand interaction detected (PLIP) MG.205: 4 residues within 4Å: Chain A: G.2584, C.2684 Chain c: G.55, T.70 No protein-ligand interaction detected (PLIP) MG.206: 2 residues within 4Å: Chain A: A.1534 Chain f: Q.30 No protein-ligand interaction detected (PLIP) MG.207: 2 residues within 4Å: Chain A: G.1864 Chain P: N.14 No protein-ligand interaction detected (PLIP) MG.208: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.209: 2 residues within 4Å: Chain B: G.81, G.82 No protein-ligand interaction detected (PLIP) MG.210: 4 residues within 4Å: Chain A: G.21, G.22 Chain C: C.35, G.36 No protein-ligand interaction detected (PLIP) MG.211: 3 residues within 4Å: Chain C: G.16, A.17, U.18 No protein-ligand interaction detected (PLIP) MG.212: 1 residues within 4Å: Chain C: A.65 No protein-ligand interaction detected (PLIP) MG.213: 3 residues within 4Å: Chain A: C.2334 Chain C: C.19, A.20 No protein-ligand interaction detected (PLIP) MG.214: 2 residues within 4Å: Chain C: C.145, U.146 No protein-ligand interaction detected (PLIP) MG.215: 2 residues within 4Å: Chain A: C.1598 Chain V: Y.130 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:Y.130 MG.216: 1 residues within 4Å: Chain 1: N.50 No protein-ligand interaction detected (PLIP) MG.217: 2 residues within 4Å: Chain A: G.2326 Chain a: H.101 No protein-ligand interaction detected (PLIP) MG.218: 1 residues within 4Å: Chain a: K.32 No protein-ligand interaction detected (PLIP) MG.219: 3 residues within 4Å: Chain A: A.2069, U.2070 Chain b: R.22 No protein-ligand interaction detected (PLIP) MG.221: 2 residues within 4Å: Chain f: G.60, T.61 1 PLIP interactions: 1 interactions with chain f Metal complexes: f:G.60

5 x ZN: ZINC ION(Non-covalent)

ZN.220: 5 residues within 4Å: Chain c: S.44, C.46, C.49, C.83, C.86 4 PLIP interactions: 4 interactions with chain c Metal complexes: c:C.46, c:C.49, c:C.83, c:C.86 ZN.222: 4 residues within 4Å: Chain f: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain f Metal complexes: f:C.19, f:C.22, f:C.34, f:C.37 ZN.223: 4 residues within 4Å: Chain i: C.96, C.99, C.110, C.115 4 PLIP interactions: 4 interactions with chain i Metal complexes: i:C.96, i:C.99, i:C.110, i:C.115 ZN.224: 4 residues within 4Å: Chain j: C.12, C.15, C.72, C.77 4 PLIP interactions: 4 interactions with chain j Metal complexes: j:C.12, j:C.15, j:C.72, j:C.77 ZN.225: 4 residues within 4Å: Chain k: C.39, C.42, C.57, C.60 4 PLIP interactions: 4 interactions with chain k Metal complexes: k:C.39, k:C.42, k:C.57, k:C.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DaRosa, P.A. et al., UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature (2024)

Release Date

2024-02-21

Peptides

E3 UFM1-protein ligase 1: D
CDK5 regulatory subunit-associated protein 3: E
DDRGK domain-containing protein 1: F
Ubiquitin-fold modifier 1: G
60S ribosomal protein L8: H
60S ribosomal protein L3: I
60S ribosomal protein L4: J
60S ribosomal protein L5: K
60S ribosomal protein L6: L
60S ribosomal protein L7: M
60S ribosomal protein L7a: N
60S ribosomal protein L9: O
Ribosomal protein uL16-like: P
60S ribosomal protein L11: Q
60S ribosomal protein L13: R
60S ribosomal protein L14: S
60S ribosomal protein L15: T
60S ribosomal protein L13a: U
60S ribosomal protein L17: V
60S ribosomal protein L18: W
60S ribosomal protein L19: X
60S ribosomal protein L18a: Y
60S ribosomal protein L21: Z
60S ribosomal protein L22: 0
60S ribosomal protein L23: 1
60S ribosomal protein L24: 2
60S ribosomal protein L23a: 3
60S ribosomal protein L26: 4
60S ribosomal protein L27: 5
60S ribosomal protein L27a: 6
60S ribosomal protein L29: 7
60S ribosomal protein L30: 8
60S ribosomal protein L31: 9
60S ribosomal protein L32: a
60S ribosomal protein L35a: b
60S ribosomal protein L34: c
60S ribosomal protein L35: d
60S ribosomal protein L36: e
60S ribosomal protein L37: f
60S ribosomal protein L38: g
60S ribosomal protein L39: h
Ubiquitin-60S ribosomal protein L40: i
60S ribosomal protein L36a: j
60S ribosomal protein L37a: k
60S ribosomal protein L28: l
60S ribosomal protein L10a: m

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

E
B

F
C

G
D

H
LA

I
LB

J
LC

K
LD

L
LE

M
LF

N
LG

O
LH

P
LI

Q
LJ

R
LL

S
LM

T
LN

U
LO

V
LP

W
LQ

X
LR

Y
LS

Z
LT

0
LU

1
LV

2
LW

3
LX

4
LY

5
LZ

6
La

7
Lb

8
Lc

9
Ld

a
Le

b
Lf

c
Lg

d
Lh

e
Li

f
Lj

g
Lk

h
Ll

i
Lm

j
Lo

k
Lp

l
Lr

m
Lz

E3 UFM1-protein ligase 1

CDK5 regulatory subunit-associated protein 3

DDRGK domain-containing protein 1

Ubiquitin-fold modifier 1

60S ribosomal protein L8

60S ribosomal protein L3

60S ribosomal protein L4

60S ribosomal protein L5

60S ribosomal protein L6

60S ribosomal protein L7

60S ribosomal protein L7a

60S ribosomal protein L9

Ribosomal protein uL16-like

60S ribosomal protein L11

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15

60S ribosomal protein L13a

60S ribosomal protein L17

60S ribosomal protein L18

60S ribosomal protein L19

60S ribosomal protein L18a

60S ribosomal protein L21

60S ribosomal protein L22

60S ribosomal protein L23

60S ribosomal protein L24

60S ribosomal protein L23a

60S ribosomal protein L26

60S ribosomal protein L27

60S ribosomal protein L27a

60S ribosomal protein L29

60S ribosomal protein L30

60S ribosomal protein L31

60S ribosomal protein L32

60S ribosomal protein L35a

60S ribosomal protein L34

60S ribosomal protein L35

60S ribosomal protein L36

60S ribosomal protein L37

60S ribosomal protein L38

60S ribosomal protein L39

Ubiquitin-60S ribosomal protein L40

60S ribosomal protein L36a

60S ribosomal protein L37a

60S ribosomal protein L28

60S ribosomal protein L10a

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