- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 33 x SO4: SULFATE ION(Non-functional Binders)
SO4.1: 4 residues within 4Å:- Chain A: P.275, G.309, Q.310, V.311
Ligand excluded by PLIPSO4.2: 3 residues within 4Å:- Chain A: V.290, D.291
- Chain C: H.24
Ligand excluded by PLIPSO4.3: 4 residues within 4Å:- Chain A: H.7, H.8, H.9, H.10
Ligand excluded by PLIPSO4.4: 3 residues within 4Å:- Chain A: P.647, L.648
- Chain D: H.243
Ligand excluded by PLIPSO4.5: 2 residues within 4Å:- Chain A: S.674, T.675
Ligand excluded by PLIPSO4.17: 1 residues within 4Å:- Chain A: R.636
Ligand excluded by PLIPSO4.18: 2 residues within 4Å:- Chain A: P.245, G.246
Ligand excluded by PLIPSO4.19: 3 residues within 4Å:- Chain B: G.309, Q.310, V.311
Ligand excluded by PLIPSO4.20: 4 residues within 4Å:- Chain B: Q.289, V.290, D.291
- Chain D: H.24
Ligand excluded by PLIPSO4.21: 3 residues within 4Å:- Chain B: P.647, L.648
- Chain C: H.243
Ligand excluded by PLIPSO4.22: 2 residues within 4Å:- Chain B: R.343, K.419
Ligand excluded by PLIPSO4.23: 4 residues within 4Å:- Chain B: T.708, G.709, K.710, A.711
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain B: S.674, T.675
Ligand excluded by PLIPSO4.25: 2 residues within 4Å:- Chain B: P.236, K.239
Ligand excluded by PLIPSO4.36: 1 residues within 4Å:- Chain B: R.636
Ligand excluded by PLIPSO4.37: 3 residues within 4Å:- Chain B: H.8, H.9, H.10
Ligand excluded by PLIPSO4.38: 6 residues within 4Å:- Chain B: N.327, A.328, G.329, R.332, F.506, D.507
Ligand excluded by PLIPSO4.39: 2 residues within 4Å:- Chain B: P.245, G.246
Ligand excluded by PLIPSO4.40: 1 residues within 4Å:- Chain C: R.382
Ligand excluded by PLIPSO4.41: 4 residues within 4Å:- Chain C: S.163, R.164, N.249, V.251
Ligand excluded by PLIPSO4.42: 2 residues within 4Å:- Chain C: R.195, L.201
Ligand excluded by PLIPSO4.43: 2 residues within 4Å:- Chain C: P.193, R.195
Ligand excluded by PLIPSO4.44: 4 residues within 4Å:- Chain C: R.42, H.43, P.44, D.45
Ligand excluded by PLIPSO4.45: 4 residues within 4Å:- Chain C: R.173, K.177, D.345, E.346
Ligand excluded by PLIPSO4.46: 3 residues within 4Å:- Chain C: N.380, R.382, R.402
Ligand excluded by PLIPSO4.50: 3 residues within 4Å:- Chain C: T.158, I.159, V.245
Ligand excluded by PLIPSO4.51: 3 residues within 4Å:- Chain D: N.380, R.382, R.402
Ligand excluded by PLIPSO4.52: 2 residues within 4Å:- Chain D: R.195, L.201
Ligand excluded by PLIPSO4.53: 2 residues within 4Å:- Chain D: P.193, R.195
Ligand excluded by PLIPSO4.54: 4 residues within 4Å:- Chain D: S.163, R.164, N.249, V.251
Ligand excluded by PLIPSO4.55: 5 residues within 4Å:- Chain D: R.42, H.43, P.44, D.45, L.46
Ligand excluded by PLIPSO4.56: 1 residues within 4Å:- Chain D: R.382
Ligand excluded by PLIPSO4.61: 2 residues within 4Å:- Chain D: T.158, W.244
Ligand excluded by PLIP- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 3 residues within 4Å:- Chain A: G.725, D.726, R.727
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.726, A:R.727, A:R.727
GOL.47: 9 residues within 4Å:- Chain C: I.36, L.39, R.40, H.43, L.46, E.48, I.51, M.79
- Ligands: A9J.48
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.43
GOL.57: 9 residues within 4Å:- Chain D: L.39, R.40, H.43, L.46, E.48, I.51, L.115, M.268
- Ligands: A9J.59
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:H.43, D:E.48
- 25 x A9J: Hexafluorophosphate anion(Non-covalent)
A9J.7: 5 residues within 4Å:- Chain A: T.88, M.89, V.100, T.103, V.307
No protein-ligand interaction detected (PLIP)A9J.8: 4 residues within 4Å:- Chain A: V.45, N.47, D.85, K.87
No protein-ligand interaction detected (PLIP)A9J.9: 4 residues within 4Å:- Chain A: V.158, T.159, M.274, M.315
No protein-ligand interaction detected (PLIP)A9J.10: 7 residues within 4Å:- Chain A: V.483, D.484, K.485, M.486, P.487, G.513, K.514
No protein-ligand interaction detected (PLIP)A9J.11: 6 residues within 4Å:- Chain A: G.83, G.84, G.131, P.156, E.157, L.160
No protein-ligand interaction detected (PLIP)A9J.12: 5 residues within 4Å:- Chain A: F.182, A.187, Q.188, L.265, Q.268
No protein-ligand interaction detected (PLIP)A9J.13: 7 residues within 4Å:- Chain A: S.457, H.478, F.480, T.527, S.528, I.531, L.571
No protein-ligand interaction detected (PLIP)A9J.14: 7 residues within 4Å:- Chain A: L.347, G.348, K.370, D.371, V.372, V.428, V.438
No protein-ligand interaction detected (PLIP)A9J.15: 4 residues within 4Å:- Chain A: D.147, L.206, V.207, A.208
No protein-ligand interaction detected (PLIP)A9J.16: 4 residues within 4Å:- Chain A: F.319, P.487, I.683, M.684
No protein-ligand interaction detected (PLIP)A9J.26: 5 residues within 4Å:- Chain B: T.88, M.89, V.100, T.103, F.303
No protein-ligand interaction detected (PLIP)A9J.27: 6 residues within 4Å:- Chain B: D.484, K.485, M.486, P.487, G.513, K.514
No protein-ligand interaction detected (PLIP)A9J.28: 8 residues within 4Å:- Chain B: L.347, G.348, K.370, D.371, V.372, V.428, V.438, E.441
No protein-ligand interaction detected (PLIP)A9J.29: 4 residues within 4Å:- Chain B: D.147, L.206, V.207, A.208
No protein-ligand interaction detected (PLIP)A9J.30: 5 residues within 4Å:- Chain B: V.158, T.159, A.187, Q.188, M.274
No protein-ligand interaction detected (PLIP)A9J.31: 6 residues within 4Å:- Chain B: G.83, G.84, G.131, P.156, E.157, L.160
No protein-ligand interaction detected (PLIP)A9J.32: 5 residues within 4Å:- Chain B: F.182, A.187, Q.188, L.265, Q.268
No protein-ligand interaction detected (PLIP)A9J.33: 4 residues within 4Å:- Chain B: F.319, P.487, I.683, M.684
No protein-ligand interaction detected (PLIP)A9J.34: 6 residues within 4Å:- Chain B: H.478, F.480, T.527, S.528, I.531, L.571
No protein-ligand interaction detected (PLIP)A9J.35: 3 residues within 4Å:- Chain B: V.45, N.47, D.85
No protein-ligand interaction detected (PLIP)A9J.48: 8 residues within 4Å:- Chain C: Y.8, E.9, L.39, H.43, L.46, M.268, L.280
- Ligands: GOL.47
No protein-ligand interaction detected (PLIP)A9J.49: 7 residues within 4Å:- Chain C: F.91, M.134, G.392
- Chain D: G.67, R.71, A.72, L.75
No protein-ligand interaction detected (PLIP)A9J.58: 6 residues within 4Å:- Chain C: R.71, A.72, L.75
- Chain D: F.91, M.134, G.392
No protein-ligand interaction detected (PLIP)A9J.59: 8 residues within 4Å:- Chain D: Y.8, E.9, L.39, H.43, L.46, M.268, L.280
- Ligands: GOL.57
No protein-ligand interaction detected (PLIP)A9J.60: 3 residues within 4Å:- Chain D: A.272, A.273, K.276
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment-binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate-channeling path between them. Acta Crystallogr D Struct Biol (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 33 x SO4: SULFATE ION(Non-functional Binders)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 25 x A9J: Hexafluorophosphate anion(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dalwani, S. et al., Crystallographic fragment-binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate-channeling path between them. Acta Crystallogr D Struct Biol (2024)
- Release Date
- 2024-01-24
- Peptides
- 3-hydroxyacyl-CoA dehydrogenase: AB
Putative acyltransferase Rv0859: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D