SMTL ID : 8p5i.3 (3 other biounits)

Kinase domain of mutant human ULK1 in complex with compound XMD-17-51

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x WYX: 5,11-dimethyl-2-[(1-piperidin-4-ylpyrazol-4-yl)amino]pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

WYX.1: 19 residues within 4Å: Chain A: I.23, G.24, V.31, A.45, K.47, V.77, M.93, E.94, Y.95, C.96, N.97, G.99, D.100, D.103, Q.143, N.144, L.146, A.165, D.166 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.146, A:A.165 Hydrogen bonds: A:K.47, A:C.96, A:C.96

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: M.108, R.109, T.110, L.111, S.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.108, A:T.110, A:T.110

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 7 residues within 4Å: Chain A: E.192, Y.199, D.200, K.202, A.203, H.264, R.267 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.192 MG.4: 7 residues within 4Å: Chain A: H.137, D.139, D.166, F.167, G.168, F.169, A.170 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.137, A:D.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battista, T. et al., Crystal structures of ULK1 in complex with KCGS compounds. To Be Published

Release Date

2024-06-05

Peptides

Serine/threonine-protein kinase ULK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Serine/threonine-protein kinase ULK1

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