SMTL ID : 8p5j.2 (1 other biounit)

Kinase domain of mutant human ULK1 in complex with compound WZ4003

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x WYT: ~{N}-[3-[5-chloranyl-2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]oxyphenyl]propanamide(Non-covalent)

WYT.1: 21 residues within 4Å: Chain A: I.23, G.24, H.25, G.26, V.31, A.45, K.47, V.77, M.93, E.94, Y.95, C.96, N.97, G.99, D.100, D.103, Q.143, N.144, L.146, A.165, D.166 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.23, A:V.31, A:L.146, A:L.146 Hydrogen bonds: A:Y.95, A:C.96, A:C.96 Water bridges: A:D.166 Salt bridges: A:D.100, A:D.103

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: E.192, Y.199, D.200, K.202, A.203, H.264, R.267 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.192, A:D.200

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: E.70, K.133, I.135, Y.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.172 Water bridges: A:E.70, A:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battista, T. et al., Crystal structures of ULK1 in complex with KCGS compounds. To Be Published

Release Date

2024-06-05

Peptides

Serine/threonine-protein kinase ULK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serine/threonine-protein kinase ULK1

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