SMTL ID : 8p5k.3 (3 other biounits)

Kinase domain of mutant human ULK1 in complex with compound MRT68921

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x HVH: ~{N}-[3-[[5-cyclopropyl-2-[(2-methyl-3,4-dihydro-1~{H}-isoquinolin-6-yl)amino]pyrimidin-4-yl]amino]propyl]cyclobutanecarboxamide(Non-covalent)

HVH.1: 23 residues within 4Å: Chain A: I.23, G.24, H.25, G.26, A.29, V.30, V.31, A.45, K.47, V.77, M.93, E.94, Y.95, C.96, N.97, G.99, D.100, D.103, Q.143, N.144, L.146, A.165, D.166 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.31, A:V.31, A:V.77, A:M.93, A:Y.95, A:L.146 Hydrogen bonds: A:C.96, A:C.96, A:Q.143 Salt bridges: A:D.100, A:D.103

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: P.186, M.187, A.220, F.222, Q.223, A.224, S.225, S.226, P.227, L.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.222, A:Q.223

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 7 residues within 4Å: Chain A: E.192, Y.199, D.200, K.202, A.203, H.264, R.267 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.192, A:D.200 MG.4: 7 residues within 4Å: Chain A: H.137, D.139, D.166, F.167, G.168, F.169, A.170 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.137, A:D.166

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 2 residues within 4Å: Chain A: R.128, H.275 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.128, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battista, T. et al., Crystal structures of ULK1 in complex with KCGS compounds. To Be Published

Release Date

2024-06-05

Peptides

Serine/threonine-protein kinase ULK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Serine/threonine-protein kinase ULK1

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