SMTL ID : 8pbf.1

Galectin-3C in complex with a triazolesulfane derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

1 x Y58: (2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(4-phenylsulfanyl-1,2,3-triazol-1-yl)oxan-2-yl]sulfanyl-oxane-3,4,5-triol(Non-covalent)

Y58.1: 14 residues within 4Å: Chain A: R.32, A.34, H.46, N.48, R.50, E.53, V.60, N.62, W.69, E.72, R.74, S.125, G.126 Ligands: SCN.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:H.46, A:R.50, A:R.50, A:N.62, A:E.72, A:E.72, A:R.74 Water bridges: A:H.46, A:W.69, A:W.69, A:E.72, A:R.74 pi-Stacking: A:H.46

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 4 residues within 4Å: Chain A: R.32, N.48, R.50 Ligands: Y58.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahanti, M. et al., Ligand Sulfur Oxidation State Progressively Alters Galectin-3-Ligand Complex Conformations To Induce Affinity-Influencing Hydrogen Bonds. J.Med.Chem. (2023)

Release Date

2023-11-08

Peptides

Galectin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-3

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