SMTL ID : 8pcx.1

Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with tetramannuronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

1 x BEM- LGU- BEM: beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid

BEM-LGU-BEM.1: 12 residues within 4Å: Chain A: K.20, Q.22, S.26, A.27, R.62, R.66, E.75, Q.108, H.110, Y.200, K.202, Y.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.22, A:Q.22, A:S.26, A:S.26, A:R.62, A:R.62, A:H.110, A:Y.200, A:K.202, A:K.20, A:Q.22 Water bridges: A:S.26, A:Q.108, A:H.110, A:Y.206, A:Y.206 Salt bridges: A:R.62, A:K.20, A:R.66

1 x MAV- BEM- BEM: beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid

MAV-BEM-BEM.2: 12 residues within 4Å: Chain A: E.103, P.115, R.118, K.125, T.139, R.141, F.151, K.153, Y.206, N.208, N.209 Ligands: CL.3 10 PLIP interactions: 10 interactions with chain A Water bridges: A:K.125, A:D.146, A:R.141, A:Y.206, A:Y.206, A:Y.206, A:N.208 Salt bridges: A:K.125, A:K.153, A:R.118, A:R.141 Hydrogen bonds: A:R.118, A:R.118, A:N.209

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: S.60, N.209 Ligands: MAV-BEM-BEM.2 Ligand excluded by PLIP

Links

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Citation

Wilknes, C., Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with tetramannuronic acid. To Be Published

Release Date

2023-07-12

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

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