SMTL ID : 8pq9.2 (1 other biounit)

c-KIT kinase domain in complex with avapritinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 9JI: Avapritinib(Non-covalent)

9JI.1: 20 residues within 4Å: Chain A: L.48, G.49, A.50, G.51, G.54, K.55, V.56, A.74, K.76, M.77, L.78, L.90, E.124, Y.125, C.126, C.127, G.129, L.192, C.202, D.203 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.48, A:L.48, A:L.48, A:K.76 Hydrogen bonds: A:C.126 Water bridges: A:D.130, A:D.130 pi-Cation interactions: A:K.76

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: Y.263, P.264, M.266, F.280, M.282, S.283 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuber, A. et al., Avapritinib-based SAR studies unveil a binding pocket in KIT and PDGFRA. Nat Commun (2024)

Release Date

2023-12-27

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Mast/stem cell growth factor receptor Kit

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