SMTL ID : 8pqf.2 (1 other biounit)

c-KIT kinase domain in complex with avapritinib derivative 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 9KI: methyl ~{N}-[(1~{S})-1-(4-fluorophenyl)-1-[2-[4-[6-(1-methylpyrazol-4-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]piperazin-1-yl]pyrimidin-5-yl]ethyl]carbamate(Non-covalent)

9KI.1: 22 residues within 4Å: Chain A: L.48, G.49, A.50, G.51, A.52, F.53, G.54, K.55, V.56, A.74, K.76, M.77, L.78, L.90, E.124, Y.125, C.126, C.127, G.129, L.192, C.202, D.203 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.48, A:L.48, A:F.53, A:K.76 Hydrogen bonds: A:A.52, A:F.53, A:Y.125, A:C.126 pi-Cation interactions: A:K.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuber, A. et al., Avapritinib-based SAR studies unveil a binding pocket in KIT and PDGFRA. Nat Commun (2024)

Release Date

2023-12-27

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Mast/stem cell growth factor receptor Kit

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