SMTL ID : 8pqa.2 (1 other biounit)

c-KIT kinase domain in complex with avapritinib derivative 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 98A: 6-(1-methylpyrazol-4-yl)-4-(4-pyrimidin-2-ylpiperazin-1-yl)pyrrolo[2,1-f][1,2,4]triazine(Non-covalent)

98A.1: 12 residues within 4Å: Chain A: L.48, G.49, A.50, V.56, A.74, E.124, Y.125, C.126, C.127, G.129, L.192, D.203 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.48 Hydrogen bonds: A:C.126 Water bridges: A:D.130, A:D.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teuber, A. et al., Avapritinib-based SAR studies unveil a binding pocket in KIT and PDGFRA. Nat Commun (2024)

Release Date

2023-12-27

Peptides

Mast/stem cell growth factor receptor Kit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Mast/stem cell growth factor receptor Kit

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