SMTL ID : 8psr.1

ERK2 covalently bound to SynthRevD-12-opt artificial peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 20 residues within 4Å: Chain A: I.35, G.38, A.39, Y.40, G.41, V.43, A.56, K.58, R.71, I.88, Q.109, D.110, M.112, D.115, K.118, D.153, K.155, S.157, L.160, D.171 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.38, A:A.39, A:Y.40, A:G.41, A:R.71, A:Q.109, A:M.112, A:D.115, A:D.115, A:K.118, A:K.155, A:K.155, A:K.155, A:D.171, A:D.171 Water bridges: A:K.58, A:R.71, A:S.157, A:S.157, A:D.171 Salt bridges: A:K.58

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: E.64, H.65, Q.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.64, A:H.65 GOL.3: 3 residues within 4Å: Chain A: R.195, H.236, Y.237 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.195, A:R.195, A:H.236, A:Y.237 Water bridges: A:L.238, A:L.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poti, A.L. et al., Targeting a key protein-protein interaction surface on mitogen-activated protein kinases by a precision-guided warhead scaffold. Nat Commun (2024)

Release Date

2024-07-24

Peptides

Mitogen-activated protein kinase 1: A
SynthRevD-12-opt: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mitogen-activated protein kinase 1

SynthRevD-12-opt

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