SMTL ID : 8pst.1

ERK2 covelently bound to RU60 cyclohexenone based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x AN2: AMP PHOSPHORAMIDATE(Non-covalent)

AN2.1: 12 residues within 4Å: Chain A: I.35, V.43, A.56, K.58, Q.109, D.110, L.111, M.112, D.115, K.118, L.160, D.171 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.110, A:M.112, A:D.115, A:K.118 Salt bridges: A:K.58

1 x DC6: ~{O}3-~{tert}-butyl ~{O}1-methyl (1~{R},3~{S})-1-methyl-4-oxidanylidene-cyclohexane-1,3-dicarboxylate(Covalent)

DC6.2: 9 residues within 4Å: Chain A: T.114, L.119, Q.123, H.129, Y.132, F.133, N.162, T.163, C.165 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.114, A:Y.132 Hydrogen bonds: A:Q.123 Salt bridges: A:H.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poti, A.L. et al., Targeting a key protein-protein interaction surface on mitogen-activated protein kinases by a precision-guided warhead scaffold. Nat Commun (2024)

Release Date

2024-07-24

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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