SMTL ID : 8pt1.1

ERK2 covelently bound to RU76 cyclohexenone based inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 20 residues within 4Å: Chain A: I.35, E.37, G.38, A.39, Y.40, G.41, V.43, A.56, K.58, R.71, Q.109, D.110, M.112, D.115, K.118, D.153, K.155, S.157, L.160, D.171 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.38, A:A.39, A:Y.40, A:G.41, A:R.71, A:D.110, A:M.112, A:D.115, A:K.155, A:D.171, A:D.171 Water bridges: A:E.37, A:K.58, A:K.58, A:R.71, A:K.118, A:K.155 Salt bridges: A:K.58

1 x E2A: ~{O}1-methyl ~{O}3-(phenylmethyl) (1~{S},3~{R})-1-methyl-4-oxidanylidene-cyclohexane-1,3-dicarboxylate(Covalent)

E2A.2: 10 residues within 4Å: Chain A: L.119, Q.123, D.128, H.129, Y.132, F.133, N.162, T.163, C.165, Y.320 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.119, A:D.128, A:Y.132, A:F.133 Salt bridges: A:H.129 pi-Cation interactions: A:H.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poti, A.L. et al., Targeting a key protein-protein interaction surface on mitogen-activated protein kinases by a precision-guided warhead scaffold. Nat Commun (2024)

Release Date

2024-07-24

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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