SMTL ID : 8q2f.1 (2 other biounits)

Cytochrome P450 BM3 aMOx-A heme domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.43 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: K.70, L.87, A.88, W.97, F.108, F.262, A.265, G.266, T.269, L.273, L.323, M.328, S.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:L.87, A:A.88, A:F.108, A:F.262, A:F.262, A:A.265, A:L.273, A:L.323, A:F.394, A:I.402, A:A.407 Salt bridges: A:K.70, A:K.70, A:R.399 Metal complexes: A:C.401 HEM.10: 25 residues within 4Å: Chain B: K.70, L.87, A.88, W.97, F.108, F.262, A.265, G.266, T.269, L.270, L.273, L.323, M.328, S.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, F.406, A.407 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:A.88, B:F.108, B:F.262, B:F.262, B:A.265, B:L.273, B:F.394, B:I.402, B:F.406 Hydrogen bonds: B:R.399 Salt bridges: B:K.70, B:K.70, B:R.399 Metal complexes: B:C.401

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Q.56, K.60, Q.388 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.56, A:K.60, A:Q.388, A:Q.388 GOL.3: 4 residues within 4Å: Chain A: H.389, K.392, N.396, G.397 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.389, A:G.397 GOL.6: 5 residues within 4Å: Chain A: Y.161, F.163, R.168, H.172, K.219 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.161, A:F.163, A:R.168, A:K.219 GOL.11: 4 residues within 4Å: Chain B: N.187, Q.190, R.191, Y.199 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.190, B:Y.199 GOL.12: 3 residues within 4Å: Chain B: H.139, H.427, K.448 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.139, B:K.448 GOL.13: 4 residues within 4Å: Chain B: Q.56, K.60, P.387, Q.388 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.56, B:K.60, B:Q.388

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 2 residues within 4Å: Chain A: S.109, Q.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.110 ACT.5: 2 residues within 4Å: Chain A: K.10, F.12 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.12 ACT.14: 2 residues within 4Å: Chain B: S.109, Q.110 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.110 Hydrogen bonds: B:Q.110 ACT.15: 3 residues within 4Å: Chain B: W.91, H.93, Y.335 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.93 ACT.16: 3 residues within 4Å: Chain B: K.283, N.429, Y.430 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.429 Salt bridges: B:K.283 ACT.17: 3 residues within 4Å: Chain B: M.6, K.42, R.51 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.42, B:R.51

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: K.77, R.80, W.91 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.77, A:R.80 SO4.8: 3 residues within 4Å: Chain A: T.11, F.12, G.13 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.11, A:T.11, A:G.13 SO4.9: 5 residues within 4Å: Chain A: K.4, E.5, M.6, K.42, R.51 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.5, A:M.6, A:R.51 Salt bridges: A:K.42 SO4.18: 3 residues within 4Å: Chain B: K.77, R.80, W.91 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.77, B:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klaus, C. et al., Directed Evolution Enables Dynamic Control of Transient Intermediates for Anti-Markovnikov Wacker-Tsuji-Type Oxidation of Unactivated Alkenes. Chemrxiv (2024)

Release Date

2025-01-15

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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