SMTL ID : 8q2f.2 (2 other biounits)

Cytochrome P450 BM3 aMOx-A heme domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.43 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: K.70, L.87, A.88, W.97, H.101, F.108, F.262, A.265, G.266, T.269, L.273, L.323, M.328, S.329, F.332, P.393, F.394, G.395, Q.398, R.399, A.400, C.401, I.402, G.403, A.407 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:L.87, A:A.88, A:F.108, A:F.262, A:F.262, A:A.265, A:L.273, A:L.323, A:F.394, A:I.402 Hydrogen bonds: A:H.101, A:R.399 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401 HEM.6: 23 residues within 4Å: Chain B: K.70, L.87, A.88, W.97, F.108, F.262, A.265, G.266, T.269, L.273, L.323, M.328, S.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:A.88, B:F.108, B:F.262, B:F.262, B:A.265, B:L.273, B:L.323, B:F.394, B:I.402 Salt bridges: B:K.70, B:K.70, B:R.399 Metal complexes: B:C.401

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.77, R.80, W.91 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.77, A:R.80 SO4.3: 3 residues within 4Å: Chain A: T.11, F.12, G.13 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.11, A:T.11, A:G.13 SO4.4: 5 residues within 4Å: Chain A: K.4, E.5, M.6, K.42, R.51 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.5, A:R.51, A:R.51 Salt bridges: A:K.42 SO4.5: 3 residues within 4Å: Chain A: N.187, R.191, Y.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.187, A:Y.199 Salt bridges: A:R.191 SO4.11: 3 residues within 4Å: Chain B: K.77, R.80, W.91 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.77, B:R.80 SO4.12: 3 residues within 4Å: Chain B: N.187, R.191, Y.199 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.187, B:N.202 Salt bridges: B:R.191 SO4.13: 2 residues within 4Å: Chain B: T.11, G.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.11, B:T.11, B:G.13

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 2 residues within 4Å: Chain B: H.93, Y.335 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.335

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 2 residues within 4Å: Chain B: K.188, D.195 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.188 ACT.9: 3 residues within 4Å: Chain B: R.168, H.172, K.219 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.168, B:H.172, B:K.219 ACT.10: 1 residues within 4Å: Chain B: H.427 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klaus, C. et al., Directed Evolution Enables Dynamic Control of Transient Intermediates for Anti-Markovnikov Wacker-Tsuji-Type Oxidation of Unactivated Alkenes. Chemrxiv (2024)

Release Date

2025-01-15

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Bifunctional cytochrome P450/NADPH--P450 reductase

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