SMTL ID : 8q2f.3 (2 other biounits)

Cytochrome P450 BM3 aMOx-A heme domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.43 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: K.70, L.87, A.88, W.97, F.108, F.262, A.265, G.266, T.269, L.273, L.323, M.328, S.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:L.87, A:A.88, A:F.108, A:F.262, A:F.262, A:A.265, A:L.273, A:L.323, A:F.394, A:I.402 Salt bridges: A:K.70, A:K.70, A:R.399 Metal complexes: A:C.401 HEM.11: 24 residues within 4Å: Chain B: K.70, L.87, A.88, W.97, F.108, F.262, A.265, G.266, T.269, L.273, L.323, M.328, S.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, F.406, A.407 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:A.88, B:F.108, B:F.262, B:F.262, B:A.265, B:L.273, B:L.323, B:F.332, B:F.394, B:I.402, B:F.406 Salt bridges: B:K.70, B:K.70, B:R.399 Metal complexes: B:C.401

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Q.56, K.60, Q.388 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.56, A:K.60, A:K.60 GOL.3: 3 residues within 4Å: Chain A: R.376, R.379, A.385 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.376, A:R.376 GOL.5: 3 residues within 4Å: Chain A: R.168, P.173, K.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.168, A:K.219 GOL.6: 1 residues within 4Å: Chain A: K.32 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.32 GOL.7: 2 residues within 4Å: Chain A: H.389, K.392 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.389, A:K.392, A:K.392 GOL.12: 2 residues within 4Å: Chain B: S.109, Q.110 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.110, B:Q.110

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 2 residues within 4Å: Chain A: K.42, R.51 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.42, A:R.51 ACT.8: 2 residues within 4Å: Chain A: R.67, T.340 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.340 Salt bridges: A:R.67 ACT.13: 2 residues within 4Å: Chain B: H.93, Y.335 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.335 Hydrogen bonds: B:Y.335 Salt bridges: B:H.93 ACT.14: 4 residues within 4Å: Chain B: N.187, R.191, Y.199, N.202 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.191 ACT.15: 2 residues within 4Å: Chain B: K.188, D.195 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.188

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 2 residues within 4Å: Chain A: T.11, G.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.11, A:G.13 SO4.10: 4 residues within 4Å: Chain A: R.224, E.229, L.239, N.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.240 Salt bridges: A:R.224 SO4.16: 3 residues within 4Å: Chain B: K.77, R.80, W.91 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.77, B:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klaus, C. et al., Directed Evolution Enables Dynamic Control of Transient Intermediates for Anti-Markovnikov Wacker-Tsuji-Type Oxidation of Unactivated Alkenes. Chemrxiv (2024)

Release Date

2025-01-15

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Bifunctional cytochrome P450/NADPH--P450 reductase

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