SMTL ID : 8q5s.1

Anaerobic crystal structure of apo-HIF prolyl hydroxylase 2 (PHD2 181-407)in complex with acetate (ACT) and HIF2alpha-CODD peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 9 residues within 4Å: Chain A: Y.129, I.153, Y.155, L.169, H.200, V.202, R.209, A.211, T.213 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.153, A:V.202 Hydrogen bonds: A:Y.155 Water bridges: A:R.209 Salt bridges: A:R.209 ACT.2: 9 residues within 4Å: Chain A: K.75, D.76, I.77, R.78, G.79, T.134, G.135, V.137 Ligands: ACT.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.135 ACT.3: 9 residues within 4Å: Chain A: G.135, Y.136, V.137, R.138, E.201, V.202, Q.203, P.204 Ligands: ACT.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorini, G. et al., HIF prolyl hydroxylase 2 in complex with HIF2alpha-CODD. To Be Published

Release Date

2024-08-21

Peptides

Egl nine homolog 1: A
Endothelial PAS domain-containing protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Egl nine homolog 1

Endothelial PAS domain-containing protein 1

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