SMTL ID : 8q6d.1

Anaerobic crystal structure of HIF prolyl hydroxylase 2 (PHD2 181-407) in complex with HIF2alpha-CODD peptide (523-542), Fe(II) and 2-oxoglutarate (2OG)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.139, D.141, F.192, H.200 Chain B: P.9 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.139, A:D.141, A:H.200, H2O.1

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 17 residues within 4Å: Chain A: R.78, M.125, Y.129, Y.136, H.139, D.141, I.153, Y.155, L.169, H.200, V.202, R.209, A.211, T.213, W.215 Chain B: P.9 Ligands: FE.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.153, A:V.202 Hydrogen bonds: A:Y.155 Water bridges: A:Y.129, A:R.209 Salt bridges: A:R.78, A:H.139, A:R.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorini, G. et al., HIF prolyl hydroxylase 2 in complex with HIF2alpha-CODD. To Be Published

Release Date

2024-08-21

Peptides

Egl nine homolog 1: A
Endothelial PAS domain-containing protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Egl nine homolog 1

Endothelial PAS domain-containing protein 1

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