SMTL ID : 8q64.1

Crystal structure of hydroxylated HIF2alpha-CODD peptide (523-542) bound to apo-HIF prolyl hydroxylase 2 (PHD2 181-407)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: V.24, N.28, G.110, K.111, G.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.28, A:G.110, A:G.113 ACT.2: 9 residues within 4Å: Chain A: K.74, D.75, I.76, R.77, G.78, G.132, T.133, G.134, V.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.74 ACT.3: 9 residues within 4Å: Chain A: Y.128, I.152, Y.154, L.168, H.199, V.201, R.208, A.210, T.212 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.152, A:L.168, A:V.201 Hydrogen bonds: A:Y.154 Water bridges: A:R.208 Salt bridges: A:R.208 ACT.4: 7 residues within 4Å: Chain A: T.61, D.62, G.63, Q.64, I.81, W.83 Chain B: Y.10 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.64, A:I.81 Hydrogen bonds: A:W.83 Water bridges: A:D.62, A:Q.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorini, G. et al., HIF prolyl hydroxylase 2 in complex with HIF2alpha-CODD. To Be Published

Release Date

2024-08-21

Peptides

Egl nine homolog 1: A
Endothelial PAS domain-containing protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Egl nine homolog 1

Endothelial PAS domain-containing protein 1

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