SMTL ID : 8qf5.1

Complex between N-lobe of Arc and nanobody E5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-2-2-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: Y.61, D.63, K.66 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.63, H2O.4 ZN.2: 2 residues within 4Å: Chain B: E.17, H.21 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.17, B:E.17, B:H.21 ZN.4: 1 residues within 4Å: Chain D: H.21 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.21, H2O.13

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain B: W.51, F.54, K.55 Chain D: G.31, S.32, E.34, Y.35 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: Q.46 Chain D: F.12, E.13, D.14, E.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy Munoz, J.M. et al., Complex between N-lobe of Arc and nanobody E5. To Be Published

Release Date

2024-03-13

Peptides

Nanobody E5: AC
Activity-regulated cytoskeleton-associated protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
A

B
H

D
B

Nanobody E5

Activity-regulated cytoskeleton-associated protein

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