SMTL ID : 8r9a.1

A soakable crystal form of human CDK7 in complex with AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: G.325, P.326, T.327, P.328 No protein-ligand interaction detected (PLIP)

1 x I74: (3R,4R)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol(Non-covalent)

I74.2: 18 residues within 4Å: Chain A: L.43, V.51, A.64, K.66, I.100, F.116, D.117, F.118, M.119, E.120, T.121, D.122, V.125, N.166, N.167, L.169, A.179, D.180 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.51, A:A.64, A:F.116, A:D.122, A:V.125 Hydrogen bonds: A:L.43, A:M.119, A:M.119, A:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mukherjee, M. et al., Protein engineering enables a soakable crystal form of human CDK7 primed for high-throughput crystallography and structure-based drug design. Structure (2024)

Release Date

2024-05-29

Peptides

Cyclin-dependent kinase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 7

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