SMTL ID : 8r9o.2 (1 other biounit)

A soakable crystal form of human CDK7 in complex with AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x YN3: ~{N}-[(1~{S})-2-(dimethylamino)-1-phenyl-ethyl]-6,6-dimethyl-3-[[4-(propanoylamino)phenyl]carbonylamino]-1,4-dihydropyrrolo[3,4-c]pyrazole-5-carboxamide(Covalent)

YN3.1: 20 residues within 4Å: Chain A: L.43, G.44, E.45, G.46, A.49, V.51, A.64, K.66, I.100, F.116, D.117, F.118, M.119, E.120, N.166, N.167, L.169, A.179, D.180, C.337 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.43, A:V.51, A:V.51, A:A.64, A:K.66, A:I.100, A:F.118, A:F.118, A:L.169 Hydrogen bonds: A:K.66, A:D.117, A:M.119, A:M.119, A:N.167 Salt bridges: A:D.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mukherjee, M. et al., Protein engineering enables a soakable crystal form of human CDK7 primed for high-throughput crystallography and structure-based drug design. Structure (2024)

Release Date

2024-05-29

Peptides

Cyclin-dependent kinase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cyclin-dependent kinase 7

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