SMTL ID : 8r9u.2 (1 other biounit)

A soakable crystal form of human CDK7 in complex with AMP-PNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x YNK: 7-dimethylphosphoryl-3-[2-[[(3~{S})-6,6-dimethylpiperidin-3-yl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]-1~{H}-indole-6-carbonitrile(Non-covalent)

YNK.1: 19 residues within 4Å: Chain A: L.43, G.44, E.45, G.46, A.49, V.51, A.64, K.66, I.100, F.116, D.117, F.118, M.119, E.120, T.121, D.122, V.125, L.169, D.180 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.51, A:V.51, A:V.51, A:A.64, A:F.118, A:L.169 Hydrogen bonds: A:M.119, A:M.119, A:D.122, A:D.122, A:D.180 Halogen bonds: A:A.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mukherjee, M. et al., Protein engineering enables a soakable crystal form of human CDK7 primed for high-throughput crystallography and structure-based drug design. Structure (2024)

Release Date

2024-05-29

Peptides

Cyclin-dependent kinase 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cyclin-dependent kinase 7

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