SMTL ID : 8rbn.1

Neutron structure of alginate lysase PsPL7C from Paradendryphiella salina soaked with penta-mannuronic acid

Coordinates

PDB Format Compare

Method

NEUTRON DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x BEM- MAW: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid(Non-covalent)

BEM-MAW.1: 12 residues within 4Å: Chain A: K.20, Q.22, S.26, A.27, R.62, R.66, E.75, Q.108, H.110, Y.200, K.202 Ligands: BEM-MAV-BEM.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.22, A:Q.22, A:Q.22, A:S.26, A:Y.200, A:Q.22, A:S.26, A:R.62, A:R.62, A:H.110, A:K.202 Water bridges: A:K.20, A:S.26 Salt bridges: A:K.20, A:K.20, A:R.66, A:R.62

1 x BEM- MAV- BEM: beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid

BEM-MAV-BEM.2: 16 residues within 4Å: Chain A: R.62, Q.108, H.110, E.113, A.114, P.115, R.118, T.139, R.141, F.151, K.153, K.202, Y.206, N.208, N.209 Ligands: BEM-MAW.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.118, A:K.153, A:K.153, A:R.118, A:R.118, A:Y.206 Water bridges: A:R.118, A:T.139, A:N.209, A:N.209, A:S.60, A:R.118, A:N.208, A:N.209 Salt bridges: A:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meilleur, F. et al., Neutron structure of alginate lysase PsPL7C from Paradendryphiella salina soaked with penta-mannuronic acid. To Be Published

Release Date

2024-01-17

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alginate lyase

Related Entries With Identical Sequence