SMTL ID : 8rcp.1 (1 other biounit)

Structure of Human Serum Albumin in complex with Myristic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

8 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 17 residues within 4Å: Chain A: L.139, R.141, P.142, M.147, F.158, L.159, Y.162, L.163, I.166, L.178, F.181, A.182, Y.185, F.189, L.206, R.210 Ligands: MYR.8 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.162, A:Y.162, A:Y.162, A:I.166, A:L.178, A:A.182, A:Y.185, A:Y.185, A:F.189 Water bridges: A:R.210, A:R.210, A:R.210 Salt bridges: A:R.141, A:R.210 MYR.2: 18 residues within 4Å: Chain A: R.34, L.38, F.43, L.46, V.47, A.50, L.90, Y.174, P.176, L.274, L.275, A.278, R.281, A.282, L.307, L.308, S.311, H.312 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.38, A:L.38, A:V.47, A:P.176, A:L.275, A:A.278, A:L.308 Hydrogen bonds: A:S.311, A:S.311, A:S.311 Water bridges: A:R.281, A:K.310, A:H.312 Salt bridges: A:R.281 MYR.3: 24 residues within 4Å: Chain A: S.366, V.368, L.369, R.372, P.408, L.411, I.412, N.415, F.427, L.431, L.454, G.455, V.457, G.458, C.461, C.462, M.470, A.473, E.474, L.477, R.509, P.510 Ligands: MYR.4, EDO.9 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.368, A:P.408, A:L.411, A:I.412, A:N.415, A:V.457, A:E.474 Hydrogen bonds: A:S.366 Water bridges: A:R.509 Salt bridges: A:R.372, A:R.509 MYR.4: 19 residues within 4Å: Chain A: L.411, N.415, L.431, R.434, Y.435, V.439, V.442, T.446, L.447, V.450, L.454, L.477, L.481, L.484, R.509, F.512, S.513, L.515 Ligands: MYR.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.435, A:L.447, A:L.481, A:L.484, A:L.484, A:F.512 Hydrogen bonds: A:N.415, A:Y.435 Salt bridges: A:R.434 MYR.5: 20 residues within 4Å: Chain A: Y.425, N.429, F.526, F.531, F.533, K.549, A.552, L.553, L.556, H.559, K.560, V.571, M.572, F.575, A.576, L.599, V.600, S.603, Q.604, L.607 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.526, A:F.531, A:F.531, A:K.549, A:L.553, A:V.571, A:F.575, A:F.575, A:F.575, A:L.599, A:Q.604 Hydrogen bonds: A:Y.425, A:N.429 Salt bridges: A:K.549 MYR.6: 19 residues within 4Å: Chain A: R.233, A.234, K.236, A.237, V.240, F.252, S.256, V.259, D.348, V.349, L.351, G.352, L.355, L.371, A.374, K.375, E.378, S.504, V.506 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.236, A:V.240, A:A.374, A:K.375 Hydrogen bonds: A:S.504 Salt bridges: A:K.375 MYR.7: 16 residues within 4Å: Chain A: K.223, W.238, R.242, L.243, R.246, F.247, L.262, V.265, H.266, R.281, L.284, A.285, I.288, S.311, I.314, A.315 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.243, A:V.265, A:I.288 Salt bridges: A:K.223, A:H.266 MYR.8: 15 residues within 4Å: Chain A: R.138, L.139, I.166, R.169, H.170, F.173, L.178, F.181, Y.185, L.209, R.210, G.213, K.214, S.217 Ligands: MYR.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.166, A:I.166, A:F.173, A:L.178, A:F.181, A:Y.185, A:K.214 Salt bridges: A:H.170

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 9 residues within 4Å: Chain A: V.368, E.474, L.477, S.478, L.481, L.505, R.508, R.509 Ligands: MYR.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.474

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pomyalov, S. et al., Structural and mechanistic insights into the transport of aristolochic acids and their active metabolites by human serum albumin. J.Biol.Chem. (2024)

Release Date

2024-06-26

Peptides

Serum albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serum albumin

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