SMTL ID : 4bke.1

Recombinant human serum albumin with palmitic acid. Synthetic cationic antimicrobial peptides bind with their hydrophobic parts to drug site II of human serum albumin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

7 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 7 residues within 4Å: Chain A: R.141, L.159, Y.162, L.163, Y.185, F.189, R.210 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.162, A:Y.185, A:Y.185, A:F.189 Salt bridges: A:R.141 PLM.2: 11 residues within 4Å: Chain A: L.46, V.47, L.90, L.93, F.94, Y.174, L.275, A.278, R.281, L.307, S.311 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.46, A:V.47, A:L.90, A:L.93, A:L.275, A:A.278, A:L.307 Hydrogen bonds: A:L.307, A:S.311, A:S.311 Salt bridges: A:R.281 PLM.3: 12 residues within 4Å: Chain A: S.366, V.368, R.372, P.408, L.411, I.412, N.415, F.427, G.458, L.477, R.509 Ligands: PLM.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.411, A:I.412, A:F.427 Hydrogen bonds: A:S.366, A:S.366 Salt bridges: A:R.372, A:R.509 PLM.4: 11 residues within 4Å: Chain A: L.411, R.434, Y.435, V.442, L.481, L.484, H.488, V.497, F.512, S.513 Ligands: PLM.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.435, A:V.442, A:L.481, A:L.484, A:H.488, A:V.497, A:F.512 Hydrogen bonds: A:Y.435, A:Y.435 Water bridges: A:K.438 Salt bridges: A:R.434, A:K.438 PLM.5: 12 residues within 4Å: Chain A: Y.425, F.526, F.531, K.549, A.552, H.559, V.571, M.572, F.575, A.576, S.603, Q.604 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.526, A:A.552, A:F.575, A:F.575, A:Q.604 Hydrogen bonds: A:Y.425 Salt bridges: A:K.549 PLM.6: 10 residues within 4Å: Chain A: R.233, A.234, A.237, S.256, D.348, L.351, L.371, A.374, S.504, V.506 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.234, A:A.237, A:L.351, A:A.374, A:V.506 PLM.7: 13 residues within 4Å: Chain A: K.223, W.238, R.242, L.243, R.246, V.265, H.266, R.281, L.284, I.288, S.311, I.314, A.315 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.238, A:L.243, A:V.265, A:L.284, A:I.288, A:I.314 Salt bridges: A:K.223, A:R.242, A:R.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivertsen, A. et al., Synthetic Cationic Antimicrobial Peptides Bind with Their Hydrophobic Parts to Drug Site II of Human Serum Albumin. Bmc Struct.Biol. (2014)

Release Date

2014-02-05

Peptides

SERUM ALBUMIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERUM ALBUMIN

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