- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 6 x MYR: MYRISTIC ACID(Non-covalent)
MYR.1: 18 residues within 4Å:- Chain A: R.34, L.38, L.46, V.47, A.50, V.70, L.90, F.94, Y.174, P.176, L.274, L.275, A.278, R.281, A.282, L.307, L.308, S.311
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:V.47, A:L.90, A:F.94, A:L.274, A:L.275, A:A.278
- Hydrogen bonds: A:Y.174, A:S.311, A:S.311, A:S.311
- Water bridges: A:R.281, A:H.312
- Salt bridges: A:R.281
MYR.2: 22 residues within 4Å:- Chain A: S.366, V.368, L.369, R.372, P.408, L.411, I.412, N.415, F.427, L.454, V.457, G.458, C.461, C.462, M.470, A.473, E.474, L.477, R.509, P.510
- Ligands: MYR.3, EDO.7
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:V.368, A:P.408, A:L.411, A:L.411, A:N.415, A:V.457, A:E.474, A:L.477, A:L.477
- Hydrogen bonds: A:S.366, A:L.369
- Water bridges: A:R.509
- Salt bridges: A:R.372, A:R.509
MYR.3: 20 residues within 4Å:- Chain A: L.411, N.415, L.431, R.434, Y.435, V.439, V.442, T.446, L.447, V.450, L.454, L.477, L.481, L.484, V.497, R.509, F.512, S.513, L.515
- Ligands: MYR.2
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.435, A:Y.435, A:L.447, A:V.450, A:L.484, A:L.484, A:F.512
- Hydrogen bonds: A:N.415, A:N.415
- Water bridges: A:Q.414
- Salt bridges: A:R.434
MYR.4: 19 residues within 4Å:- Chain A: Y.425, N.429, F.526, F.531, F.533, K.549, A.552, L.553, L.556, H.559, V.571, M.572, F.575, A.576, L.599, V.600, S.603, Q.604, L.607
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.526, A:F.531, A:F.575, A:L.599
- Hydrogen bonds: A:Y.425
- Salt bridges: A:K.549
MYR.5: 19 residues within 4Å:- Chain A: R.233, A.234, K.236, A.237, V.240, F.252, S.256, V.259, D.348, V.349, L.351, G.352, L.355, L.371, A.374, K.375, E.378, S.504, V.506
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:K.236, A:V.240, A:L.351
- Water bridges: A:S.504
MYR.6: 17 residues within 4Å:- Chain A: K.223, W.238, R.242, L.243, R.246, F.247, L.262, V.265, H.266, R.281, L.284, A.285, I.288, S.311, I.314, A.315, V.317
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.243, A:V.265, A:I.288
- Salt bridges: A:K.223, A:H.266
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 9 residues within 4Å:- Chain A: V.368, E.474, L.477, S.478, L.481, L.505, R.508, R.509
- Ligands: MYR.2
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.474, A:L.477
- 1 x GOQ: 8-methoxy-6-nitro-naphtho[1,2-e][1,3]benzodioxole-5-carboxylic acid(Non-covalent)
GOQ.8: 16 residues within 4Å:- Chain A: L.139, R.141, P.142, M.147, F.158, L.159, Y.162, L.163, I.166, L.178, F.181, A.182, Y.185, F.189, L.206, R.210
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:Y.162, A:Y.162, A:I.166, A:A.182, A:Y.185
- Water bridges: A:R.141, A:R.141, A:Y.162
- Salt bridges: A:R.141
- pi-Stacking: A:Y.162, A:Y.185
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pomyalov, S. et al., Structural and mechanistic insights into the transport of aristolochic acids and their active metabolites by human serum albumin. J.Biol.Chem. (2024)
- Release Date
- 2024-06-26
- Peptides
- Serum albumin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 6 x MYR: MYRISTIC ACID(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x GOQ: 8-methoxy-6-nitro-naphtho[1,2-e][1,3]benzodioxole-5-carboxylic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pomyalov, S. et al., Structural and mechanistic insights into the transport of aristolochic acids and their active metabolites by human serum albumin. J.Biol.Chem. (2024)
- Release Date
- 2024-06-26
- Peptides
- Serum albumin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A