SMTL ID : 8rd0.1

HUWE1 WWE domain in complex with compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.49, N.60, N.65, R.67 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: F.11, D.13, P.68 Chain B: F.11, D.13, R.67 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: N.60, T.63, N.65 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain C: Y.49, N.60, N.65, R.67 Ligands: 51X.5 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain D: Y.21, S.22, N.25, A.44 Ligands: 51X.8 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain D: Y.49, N.60, N.65, R.67 Ligands: 51X.8 Ligand excluded by PLIP

2 x 51X: (1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)acetic acid(Non-covalent)

51X.5: 11 residues within 4Å: Chain C: W.10, R.14, Y.21, N.25, F.42, A.44, Y.49, Q.58, N.60, R.67 Ligands: CL.4 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:Y.21, C:F.42, C:A.44, C:Y.49 Hydrogen bonds: C:Y.49, C:Y.49, C:Q.58, C:N.60, C:R.67 Water bridges: C:N.65 Salt bridges: C:R.14, C:R.67 pi-Stacking: C:W.10 51X.8: 13 residues within 4Å: Chain D: W.10, R.14, Y.21, N.25, F.42, A.44, R.47, Y.49, Q.58, N.60, R.67 Ligands: CL.6, CL.7 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:W.10, D:A.44 Hydrogen bonds: D:Y.49, D:Q.58, D:N.60, D:R.67 Water bridges: D:N.65 Salt bridges: D:R.14, D:R.67 pi-Stacking: D:W.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munzker, L. et al., A ligand discovery toolbox for the WWE domain family of human E3 ligases. Commun Biol (2024)

Release Date

2024-07-31

Peptides

E3 ubiquitin-protein ligase HUWE1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E3 ubiquitin-protein ligase HUWE1

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