SMTL ID : 8rd7.1

HUWE1 WWE domain in complex with ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

homo-tetramer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.49, N.60, N.65, R.67 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain A: F.11, D.13, P.68 Chain B: F.11, D.13, R.67 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: N.60, T.63, N.65 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain C: N.60, N.65, R.67 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain D: Y.21, S.22, N.25, A.44 Ligands: AR6.7 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain B: W.10, F.42, A.44, Y.49 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.44 Water bridges: B:N.25, B:Q.58

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain C: W.10, Y.21, A.44, Y.49, Q.58, R.67 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.58, C:Q.58, C:R.67

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.7: 13 residues within 4Å: Chain D: W.10, D.12, Y.21, F.42, A.44, R.47, Y.49, Q.58, N.60, T.63, N.65, R.67 Ligands: CL.8 20 PLIP interactions: 20 interactions with chain D Hydrogen bonds: D:D.12, D:R.47, D:Q.58, D:Q.58, D:N.60, D:T.63, D:N.65 Water bridges: D:D.12, D:Y.49, D:Y.49, D:N.60, D:N.65, D:R.67, D:R.67, D:R.67 Salt bridges: D:R.47, D:R.67, D:R.67 pi-Stacking: D:W.10, D:W.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munzker, L. et al., A ligand discovery toolbox for the WWE domain family of human E3 ligases. Commun Biol (2024)

Release Date

2024-07-31

Peptides

E3 ubiquitin-protein ligase HUWE1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E3 ubiquitin-protein ligase HUWE1

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