SMTL ID : 8ruc.1

ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL BISPHOSPHATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-8-8-mer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: T.173, K.177, K.201, D.203, E.204 Chain K: N.123 Ligands: CAP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.203, A:E.204 MG.3: 8 residues within 4Å: Chain B: T.173, K.175, K.177, K.201, D.203, E.204 Chain J: N.123 Ligands: CAP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.203, B:E.204 MG.5: 7 residues within 4Å: Chain C: K.177, K.201, D.203, E.204, H.294 Chain I: N.123 Ligands: CAP.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.203, C:E.204 MG.7: 8 residues within 4Å: Chain D: T.173, K.177, K.201, D.203, E.204, H.294 Chain L: N.123 Ligands: CAP.8 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.203, D:E.204 MG.9: 7 residues within 4Å: Chain C: N.123 Chain I: T.173, K.177, K.201, D.203, E.204 Ligands: CAP.10 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:D.203, I:E.204 MG.11: 8 residues within 4Å: Chain B: N.123 Chain J: T.173, K.175, K.177, K.201, D.203, E.204 Ligands: CAP.12 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:D.203, J:E.204 MG.13: 7 residues within 4Å: Chain A: N.123 Chain K: K.177, K.201, D.203, E.204, H.294 Ligands: CAP.14 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:D.203, K:E.204 MG.15: 8 residues within 4Å: Chain D: N.123 Chain L: T.173, K.177, K.201, D.203, E.204, H.294 Ligands: CAP.16 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:D.203, L:E.204

8 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)

CAP.2: 21 residues within 4Å: Chain A: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404 Chain K: E.60, T.65, W.66, N.123 Ligands: MG.1 31 PLIP interactions: 28 interactions with chain A, 3 interactions with chain K Hydrogen bonds: A:T.173, A:K.175, A:S.379, A:G.381, A:G.403, A:G.404, K:T.65, K:T.65, K:N.123 Water bridges: A:T.173, A:T.173, A:K.177, A:K.177, A:K.177, A:K.177, A:R.295, A:R.295, A:R.295, A:H.298, A:G.329, A:S.379, A:G.380, A:I.382, A:G.405 Salt bridges: A:K.175, A:K.175, A:K.177, A:R.295, A:H.327, A:K.334, A:K.334 CAP.4: 21 residues within 4Å: Chain B: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404 Chain J: E.60, T.65, W.66, N.123 Ligands: MG.3 32 PLIP interactions: 29 interactions with chain B, 3 interactions with chain J Hydrogen bonds: B:T.173, B:K.175, B:H.298, B:S.379, B:S.379, B:G.380, B:G.381, B:G.403, B:G.404, J:T.65, J:T.65, J:N.123 Water bridges: B:T.173, B:K.177, B:K.177, B:K.177, B:K.177, B:R.295, B:R.295, B:G.329, B:S.379, B:I.382, B:I.382, B:Q.401, B:G.405 Salt bridges: B:K.175, B:K.175, B:K.177, B:R.295, B:H.327, B:K.334, B:K.334 CAP.6: 22 residues within 4Å: Chain C: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404 Chain I: E.60, T.65, W.66, N.123 Ligands: MG.5 30 PLIP interactions: 27 interactions with chain C, 3 interactions with chain I Hydrogen bonds: C:T.173, C:K.175, C:S.379, C:S.379, C:G.381, C:G.403, C:G.404, I:T.65, I:T.65, I:N.123 Water bridges: C:T.173, C:T.173, C:K.177, C:K.177, C:K.177, C:K.177, C:R.295, C:H.298, C:G.329, C:G.380, C:I.382, C:I.382, C:G.405 Salt bridges: C:K.175, C:K.175, C:K.177, C:R.295, C:H.327, C:K.334, C:K.334 CAP.8: 23 residues within 4Å: Chain D: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404 Chain L: E.60, T.65, W.66, N.123 Ligands: MG.7 29 PLIP interactions: 25 interactions with chain D, 4 interactions with chain L Hydrogen bonds: D:T.173, D:K.175, D:H.298, D:S.379, D:G.381, D:G.403, D:G.404, L:T.65, L:T.65, L:N.123 Water bridges: D:T.173, D:K.177, D:K.177, D:R.295, D:R.295, D:G.329, D:K.334, D:G.380, D:I.382, D:Q.401, D:G.405, L:E.60 Salt bridges: D:K.175, D:K.175, D:K.177, D:R.295, D:H.327, D:K.334, D:K.334 CAP.10: 21 residues within 4Å: Chain C: E.60, T.65, W.66, N.123 Chain I: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404 Ligands: MG.9 32 PLIP interactions: 29 interactions with chain I, 3 interactions with chain C Hydrogen bonds: I:T.173, I:T.173, I:K.175, I:S.379, I:G.381, I:G.403, I:G.404, C:T.65, C:T.65, C:N.123 Water bridges: I:T.173, I:K.177, I:K.177, I:K.177, I:K.177, I:R.295, I:R.295, I:R.295, I:H.298, I:G.329, I:S.379, I:G.380, I:I.382, I:Q.401, I:G.405 Salt bridges: I:K.175, I:K.175, I:K.177, I:R.295, I:H.327, I:K.334, I:K.334 CAP.12: 21 residues within 4Å: Chain B: E.60, T.65, W.66, N.123 Chain J: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, G.403, G.404 Ligands: MG.11 32 PLIP interactions: 29 interactions with chain J, 3 interactions with chain B Hydrogen bonds: J:T.173, J:T.173, J:K.175, J:H.298, J:S.379, J:S.379, J:G.380, J:G.381, J:G.403, J:G.404, B:T.65, B:T.65, B:N.123 Water bridges: J:K.177, J:K.177, J:K.177, J:K.177, J:R.295, J:R.295, J:G.329, J:S.379, J:I.382, J:I.382, J:Q.401, J:G.405 Salt bridges: J:K.175, J:K.175, J:K.177, J:R.295, J:H.327, J:K.334, J:K.334 CAP.14: 22 residues within 4Å: Chain A: E.60, T.65, W.66, N.123 Chain K: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404 Ligands: MG.13 31 PLIP interactions: 28 interactions with chain K, 3 interactions with chain A Hydrogen bonds: K:T.173, K:T.173, K:K.175, K:S.379, K:S.379, K:G.381, K:G.403, K:G.404, A:T.65, A:T.65, A:N.123 Water bridges: K:T.173, K:K.177, K:K.177, K:K.177, K:K.177, K:R.295, K:H.298, K:G.329, K:G.380, K:I.382, K:I.382, K:Q.401, K:G.405 Salt bridges: K:K.175, K:K.175, K:K.177, K:R.295, K:H.327, K:K.334, K:K.334 CAP.16: 23 residues within 4Å: Chain D: E.60, T.65, W.66, N.123 Chain L: T.173, K.175, K.177, K.201, D.203, E.204, H.294, R.295, H.298, H.327, K.334, L.335, S.379, G.380, G.381, F.402, G.403, G.404 Ligands: MG.15 30 PLIP interactions: 27 interactions with chain L, 3 interactions with chain D Hydrogen bonds: L:T.173, L:T.173, L:K.175, L:E.204, L:H.298, L:S.379, L:G.381, L:G.403, L:G.404, D:T.65, D:T.65, D:N.123 Water bridges: L:K.177, L:K.177, L:K.177, L:R.295, L:R.295, L:G.329, L:K.334, L:G.380, L:I.382, L:Q.401, L:G.405 Salt bridges: L:K.175, L:K.175, L:K.177, L:R.295, L:H.327, L:K.334, L:K.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andersson, I., Large structures at high resolution: the 1.6 A crystal structure of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase complexed with 2-carboxyarabinitol bisphosphate. J.Mol.Biol. (1996)

Release Date

1996-08-01

Peptides

RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE: ABCDIJKL
RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE: EFGHMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

I
A

J
C

K
E

L
G

E
I

F
J

G
K

H
L

M
I

N
J

O
K

P
L

RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE

RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE

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