SMTL ID : 8s0r.1

Cryo-EM structure of CAK modified by covalent inhibitor SY-1365

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: ~{N}-[(1~{S},3~{R})-3-[[5-chloranyl-4-(1~{H}-indol-3-yl)pyrimidin-2-yl]amino]-1-methyl-cyclohexyl]-5-[4-(dimethylamino)butanoylamino]pyridine-2-carboxamide

01.1: 22 residues within 4Å: Chain C: L.21, G.22, E.23, G.24, V.29, A.42, K.44, I.78, F.94, D.95, F.96, M.97, E.98, T.99, D.100, V.103, L.147, A.157, D.158, P.313, N.314, C.315 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:V.29, C:F.96, C:L.147 Hydrogen bonds: C:M.97, C:M.97, C:D.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, T. et al., Cryo-EM structure of CAK modified by covalent inhibitor SY-1365. To Be Published

Release Date

2024-12-25

Peptides

CDK-activating kinase assembly factor MAT1: A
Cyclin-H: B
Cyclin-dependent kinase 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

CDK-activating kinase assembly factor MAT1

Cyclin-H

Cyclin-dependent kinase 7

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