SMTL ID : 8s0t.1

Cryo-EM structure of CAK in complex with SY-5609

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x YNK: 7-dimethylphosphoryl-3-[2-[[(3~{S})-6,6-dimethylpiperidin-3-yl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]-1~{H}-indole-6-carbonitrile(Non-covalent)

YNK.1: 20 residues within 4Å: Chain C: L.21, G.22, E.23, G.24, A.27, V.29, A.42, K.44, I.78, F.94, D.95, F.96, M.97, E.98, T.99, D.100, V.103, L.147, A.157, D.158 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:L.21, C:V.29, C:V.29, C:V.29, C:A.42, C:F.96, C:V.103, C:L.147 Hydrogen bonds: C:E.23, C:K.44, C:M.97, C:M.97, C:D.100, C:D.158 Halogen bonds: C:D.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, T. et al., Cryo-EM structure of CAK in complex with SY-5609. To Be Published

Release Date

2024-12-25

Peptides

CDK-activating kinase assembly factor MAT1: A
Cyclin-H: B
Cyclin-dependent kinase 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

CDK-activating kinase assembly factor MAT1

Cyclin-H

Cyclin-dependent kinase 7

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