SMTL ID : 8s4m.2 (2 other biounits)

Crystal structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 34 residues within 4Å: Chain A: S.68, M.101, L.102, H.109, R.113, F.120, I.164, L.167, M.249, L.250, A.253, G.254, T.257, T.258, S.261, V.292, P.297, V.298, F.301, R.303, Y.326, G.353, F.354, G.355, G.356, A.359, H.360, Y.361, C.362, I.363, G.364, L.367, A.368, I.372 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:F.120, A:L.250, A:V.292, A:F.301, A:Y.326, A:F.354, A:I.363, A:L.367 Hydrogen bonds: A:G.356, A:A.359 Water bridges: A:Y.326, A:G.356, A:H.360 Salt bridges: A:H.109, A:R.113, A:R.303, A:H.360 pi-Stacking: A:F.354 Metal complexes: A:C.362

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.44, G.45, H.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.45 Water bridges: A:H.51 Salt bridges: A:H.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kavanagh, M.E. et al., Fragment-based development of small molecule inhibitors targeting Mycobacterium tuberculosis cholesterol metabolism. Biorxiv (2024)

Release Date

2025-01-29

Peptides

Steroid C26-monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Steroid C26-monooxygenase

Related Entries With Identical Sequence