SMTL ID : 8sf3.1

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (AMP, Acetate and CoA bound)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 16 residues within 4Å: Chain A: G.447, E.448, P.449, D.471, T.472, W.473, W.474, Q.475, T.476, D.560, I.572, R.575, N.581, G.584, R.586 Ligands: ACT.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.447, A:T.472, A:W.474, A:Q.475, A:T.476, A:T.476, A:D.560, A:R.575, A:N.581, A:R.586 Water bridges: A:G.584 Salt bridges: A:R.586 pi-Stacking: A:W.473, A:W.473

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: I.370, T.371, V.446, G.447, W.474, T.476 Ligands: AMP.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.446, A:W.474 Hydrogen bonds: A:T.476 Water bridges: A:T.371

1 x COA: COENZYME A(Non-covalent)

COA.3: 9 residues within 4Å: Chain A: F.217, G.218, G.219, R.245, K.248, I.250, D.366, R.644, P.649 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.245, A:K.248, A:D.366 Water bridges: A:R.644 Salt bridges: A:R.245, A:K.248, A:R.644

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (AMP and CoA bound). To be published

Release Date

2023-04-19

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetyl-coenzyme A synthetase

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