SMTL ID : 8u2t.1

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA and AMP bound)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.63, H.356, M.357 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.357 Water bridges: A:D.358, A:D.358 Salt bridges: A:H.63, A:H.356 SO4.2: 3 residues within 4Å: Chain A: K.670, I.671, R.673 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.671 Salt bridges: A:R.673 SO4.3: 2 residues within 4Å: Chain A: T.162, S.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.162 Water bridges: A:S.165, A:S.165 SO4.4: 3 residues within 4Å: Chain A: H.105, S.108, Y.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.109 Salt bridges: A:H.105 SO4.5: 6 residues within 4Å: Chain A: F.217, T.364, A.365, D.366, W.369, H.585 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.366, A:W.369 Water bridges: A:R.245, A:T.364 Salt bridges: A:H.585

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: S.327, T.328, R.544, T.548 Ligand excluded by PLIP

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.7: 15 residues within 4Å: Chain A: I.370, G.447, E.448, P.449, D.471, T.472, W.473, W.474, Q.475, T.476, D.560, I.572, R.575, N.581, R.586 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.447, A:T.472, A:W.474, A:Q.475, A:T.476, A:T.476, A:T.476, A:D.560, A:R.575, A:N.581 Water bridges: A:I.450, A:T.476, A:T.476 Salt bridges: A:R.586 pi-Stacking: A:W.473, A:W.473

1 x COA: COENZYME A(Non-covalent)

COA.8: 10 residues within 4Å: Chain A: F.217, G.218, G.219, R.245, K.248, I.250, D.366, V.393, R.644, P.649 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.248, A:D.366 Water bridges: A:P.649, A:L.650, A:T.652 Salt bridges: A:R.245, A:K.248, A:R.644

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovell, S. et al., Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA and AMP bound). To be published

Release Date

2023-09-13

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acetyl-coenzyme A synthetase

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