SMTL ID : 8u2s.2 (1 other biounit)

Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound, P21 form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

4 x CAC: CACODYLATE ION(Non-covalent)

CAC.1: 5 residues within 4Å: Chain A: H.63, Y.355, H.356, M.357 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.356, A:M.357 CAC.2: 6 residues within 4Å: Chain A: F.217, T.364, A.365, D.366, W.369, H.585 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.366 CAC.3: 2 residues within 4Å: Chain A: K.143, G.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.143 CAC.4: 1 residues within 4Å: Chain A: H.81 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: H.63, M.350, H.356 Ligands: CAC.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.63 GOL.6: 5 residues within 4Å: Chain A: D.578, V.672, R.673, R.674, R.677 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.578, A:R.673, A:R.674, A:R.677, A:R.677

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain A: R.644 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: D.565, S.566 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: S.108, K.121, E.124 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: S.227, K.230 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: H.67, L.68 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: H.81, D.83, A.84 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: R.188 Ligand excluded by PLIP

1 x WTA: 5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine(Non-covalent)

WTA.14: 16 residues within 4Å: Chain A: I.370, V.446, G.447, E.448, P.449, D.471, T.472, W.473, W.474, Q.475, T.476, D.560, I.572, R.575, N.581, R.586 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.446, A:W.474 Hydrogen bonds: A:G.447, A:T.472, A:W.474, A:Q.475, A:T.476, A:T.476, A:D.560, A:R.575 Salt bridges: A:R.586 pi-Stacking: A:W.473, A:W.473

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound, P21 form). To be published

Release Date

2023-09-13

Peptides

Acetyl-coenzyme A synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Acetyl-coenzyme A synthetase

Related Entries With Identical Sequence