SMTL ID : 8shb.1

Crystal Structure of PRMT3 with Compound YD1-208

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x GV3: 5'-S-[3-(N'-phenylcarbamimidamido)propyl]-5'-thioadenosine

GV3.1: 21 residues within 4Å: Chain A: I.38, H.39, E.41, M.42, G.72, D.94, Q.95, S.96, I.98, G.120, K.121, I.122, E.123, E.138, W.139, M.140, Y.142, M.149, S.152, H.288, W.289 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.38, A:Y.142 Hydrogen bonds: A:H.39, A:Q.95, A:S.96, A:S.96, A:I.122, A:E.123, A:E.138, A:S.152 Water bridges: A:M.140 Salt bridges: A:E.138 pi-Stacking: A:H.288 GV3.2: 21 residues within 4Å: Chain B: I.38, H.39, E.41, M.42, G.72, D.94, Q.95, S.96, I.98, G.120, K.121, I.122, E.123, E.138, W.139, M.140, Y.142, M.149, S.152, H.288, W.289 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.38, B:Y.142 Hydrogen bonds: B:H.39, B:Q.95, B:S.96, B:S.96, B:I.122, B:E.123, B:E.138, B:S.152 Water bridges: B:M.140 Salt bridges: B:E.138 pi-Stacking: B:H.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, X. et al., Crystal Structure of PRMT3 with Compound YD1-208. To be published

Release Date

2024-04-24

Peptides

Protein arginine N-methyltransferase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 3

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