SMTL ID : 8shr.1

Crystal Structure of PRMT3 with Compound YD1-214

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x HIY: 5'-S-[2-(phenylcarbamamido)ethyl]-5'-thioadenosine

HIY.1: 22 residues within 4Å: Chain A: Y.33, H.39, M.42, L.43, R.48, T.49, Y.52, G.72, C.73, G.74, I.77, L.78, D.94, Q.95, S.96, G.120, K.121, I.122, E.123, E.138, M.149, S.152 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.43, A:T.49, A:Y.52, A:I.77, A:L.78, A:E.138 Hydrogen bonds: A:R.48, A:R.48, A:G.72, A:Q.95, A:Q.95, A:S.96, A:I.122, A:E.123, A:S.152 Water bridges: A:T.75, A:E.138, A:E.138 pi-Stacking: A:Y.52 pi-Cation interactions: A:R.48 HIY.2: 22 residues within 4Å: Chain B: Y.33, H.39, M.42, L.43, R.48, T.49, Y.52, G.72, C.73, G.74, I.77, L.78, D.94, Q.95, S.96, G.120, K.121, I.122, E.123, E.138, M.149, S.152 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:L.43, B:T.49, B:Y.52, B:I.77, B:L.78, B:E.138 Hydrogen bonds: B:R.48, B:R.48, B:G.72, B:Q.95, B:Q.95, B:S.96, B:I.122, B:E.123, B:S.152 Water bridges: B:H.39, B:T.75, B:E.138, B:E.138 pi-Stacking: B:Y.52 pi-Cation interactions: B:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, X. et al., Crystal Structure of PRMT3 with Compound YD1-214. To be published

Release Date

2024-04-17

Peptides

Protein arginine N-methyltransferase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 3

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