- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 12 x CLR: CHOLESTEROL(Non-covalent)
CLR.3: 8 residues within 4Å:- Chain A: L.878, V.898, I.902, F.905
- Chain D: E.1009, T.1010, M.1013
- Ligands: CLR.17
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:L.878, A:L.878, A:V.898, A:I.902, A:I.902, A:F.905, D:T.1010
CLR.4: 12 residues within 4Å:- Chain A: F.1003, R.1012, P.1015, A.1019
- Chain B: V.942, L.945, L.946, I.972, L.975, F.976, Y.979
- Ligands: CLR.5
11 PLIP interactions:5 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:F.1003, A:P.1015, A:A.1019, B:V.942, B:L.945, B:I.972, B:F.976, B:Y.979, B:Y.979
- Hydrogen bonds: A:R.1012, A:R.1012
CLR.5: 6 residues within 4Å:- Chain A: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.4, CLR.8
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.1016
CLR.8: 8 residues within 4Å:- Chain A: E.1009, T.1010, M.1013
- Chain B: L.878, V.898, I.902, F.905
- Ligands: CLR.5
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.878, B:L.878, B:V.898, B:I.902, B:I.902, B:F.905, A:T.1010
CLR.9: 12 residues within 4Å:- Chain B: F.1003, R.1012, P.1015, A.1019
- Chain C: V.942, L.945, L.946, I.972, L.975, F.976, Y.979
- Ligands: CLR.10
11 PLIP interactions:6 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:V.942, C:L.945, C:I.972, C:F.976, C:Y.979, C:Y.979, B:F.1003, B:P.1015, B:A.1019
- Hydrogen bonds: B:R.1012, B:R.1012
CLR.10: 6 residues within 4Å:- Chain B: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.9, CLR.13
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.1016
CLR.13: 8 residues within 4Å:- Chain B: E.1009, T.1010, M.1013
- Chain C: L.878, V.898, I.902, F.905
- Ligands: CLR.10
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:L.878, C:L.878, C:V.898, C:I.902, C:I.902, C:F.905, B:T.1010
CLR.14: 12 residues within 4Å:- Chain C: F.1003, R.1012, P.1015, A.1019
- Chain D: V.942, L.945, L.946, I.972, L.975, F.976, Y.979
- Ligands: CLR.15
11 PLIP interactions:6 interactions with chain D, 5 interactions with chain C- Hydrophobic interactions: D:V.942, D:L.945, D:I.972, D:F.976, D:Y.979, D:Y.979, C:F.1003, C:P.1015, C:A.1019
- Hydrogen bonds: C:R.1012, C:R.1012
CLR.15: 6 residues within 4Å:- Chain C: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.14, CLR.20
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:F.1016
CLR.16: 12 residues within 4Å:- Chain A: V.942, L.945, L.946, I.972, L.975, F.976, Y.979
- Chain D: F.1003, R.1012, P.1015, A.1019
- Ligands: CLR.17
11 PLIP interactions:6 interactions with chain A, 5 interactions with chain D- Hydrophobic interactions: A:V.942, A:L.945, A:I.972, A:F.976, A:Y.979, A:Y.979, D:F.1003, D:P.1015, D:A.1019
- Hydrogen bonds: D:R.1012, D:R.1012
CLR.17: 6 residues within 4Å:- Chain D: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.3, CLR.16
1 PLIP interactions:1 interactions with chain D- Hydrophobic interactions: D:F.1016
CLR.20: 8 residues within 4Å:- Chain C: E.1009, T.1010, M.1013
- Chain D: L.878, V.898, I.902, F.905
- Ligands: CLR.15
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.878, D:L.878, D:V.898, D:I.902, D:I.902, D:F.905, C:T.1010
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Y. et al., Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-05-08
- Peptides
- TRPM2 chanzyme: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 12 x CLR: CHOLESTEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Y. et al., Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-05-08
- Peptides
- TRPM2 chanzyme: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.