- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
- 17 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.2: 5 residues within 4Å:- Chain A: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.850, A:D.872
CA.3: 4 residues within 4Å:- Chain A: L.621, I.622, G.623, E.1114
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:L.621, A:G.623, A:E.1114
CA.4: 5 residues within 4Å:- Chain A: G.1370, E.1390, D.1460
- Ligands: CA.5, APR.7
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:G.1370, A:E.1390
CA.5: 5 residues within 4Å:- Chain A: E.1386, E.1390, D.1460
- Ligands: CA.4, APR.7
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.1386, A:E.1390, A:D.1460
CA.10: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.12: 5 residues within 4Å:- Chain B: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.850, B:D.872
CA.13: 4 residues within 4Å:- Chain B: L.621, I.622, G.623, E.1114
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:L.621, B:G.623, B:E.1114
CA.14: 5 residues within 4Å:- Chain B: G.1370, E.1390, D.1460
- Ligands: CA.15, APR.17
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:G.1370, B:E.1390
CA.15: 5 residues within 4Å:- Chain B: E.1386, E.1390, D.1460
- Ligands: CA.14, APR.17
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.1386, B:E.1390, B:D.1460
CA.21: 5 residues within 4Å:- Chain C: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.850, C:D.872
CA.22: 4 residues within 4Å:- Chain C: L.621, I.622, G.623, E.1114
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:L.621, C:G.623, C:E.1114
CA.23: 5 residues within 4Å:- Chain C: G.1370, E.1390, D.1460
- Ligands: CA.24, APR.26
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:G.1370, C:E.1390
CA.24: 5 residues within 4Å:- Chain C: E.1386, E.1390, D.1460
- Ligands: CA.23, APR.26
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.1386, C:E.1390, C:D.1460
CA.32: 5 residues within 4Å:- Chain D: E.850, Q.853, N.869, D.872, R.913
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.850, D:D.872
CA.33: 4 residues within 4Å:- Chain D: L.621, I.622, G.623, E.1114
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:L.621, D:G.623, D:E.1114
CA.34: 5 residues within 4Å:- Chain D: G.1370, E.1390, D.1460
- Ligands: CA.35, APR.37
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:G.1370, D:E.1390
CA.35: 5 residues within 4Å:- Chain D: E.1386, E.1390, D.1460
- Ligands: CA.34, APR.37
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.1386, D:E.1390, D:D.1460
- 12 x CLR: CHOLESTEROL(Non-covalent)
CLR.6: 8 residues within 4Å:- Chain A: L.878, V.898, I.902, F.905
- Chain D: E.1009, T.1010, M.1013
- Ligands: CLR.30
7 PLIP interactions:1 interactions with chain D, 6 interactions with chain A- Hydrophobic interactions: D:T.1010, A:L.878, A:V.898, A:I.902, A:F.905, A:F.905, A:F.905
CLR.8: 14 residues within 4Å:- Chain A: F.1003, R.1012, P.1015, F.1016, A.1019
- Chain B: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Ligands: CLR.9
13 PLIP interactions:7 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:L.945, B:L.946, B:L.946, B:L.949, B:F.976, B:Y.979, B:Y.979, A:F.1003, A:P.1015, A:F.1016, A:F.1016, A:A.1019
- Hydrogen bonds: A:R.1012
CLR.9: 6 residues within 4Å:- Chain A: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.8, CLR.16
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:R.1012, A:F.1016, A:F.1016, A:F.1016
- Hydrogen bonds: A:E.1009
CLR.16: 8 residues within 4Å:- Chain A: E.1009, T.1010, M.1013
- Chain B: L.878, V.898, I.902, F.905
- Ligands: CLR.9
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.878, B:V.898, B:I.902, B:F.905, B:F.905, B:F.905, A:T.1010
CLR.18: 14 residues within 4Å:- Chain B: F.1003, R.1012, P.1015, F.1016, A.1019
- Chain C: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Ligands: CLR.19
13 PLIP interactions:7 interactions with chain C, 6 interactions with chain B- Hydrophobic interactions: C:L.945, C:L.946, C:L.946, C:L.949, C:F.976, C:Y.979, C:Y.979, B:F.1003, B:P.1015, B:F.1016, B:F.1016, B:A.1019
- Hydrogen bonds: B:R.1012
CLR.19: 6 residues within 4Å:- Chain B: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.18, CLR.25
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:R.1012, B:F.1016, B:F.1016, B:F.1016
- Hydrogen bonds: B:E.1009
CLR.25: 8 residues within 4Å:- Chain B: E.1009, T.1010, M.1013
- Chain C: L.878, V.898, I.902, F.905
- Ligands: CLR.19
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:L.878, C:V.898, C:I.902, C:F.905, C:F.905, C:F.905, B:T.1010
CLR.27: 14 residues within 4Å:- Chain C: F.1003, R.1012, P.1015, F.1016, A.1019
- Chain D: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Ligands: CLR.28
13 PLIP interactions:7 interactions with chain D, 6 interactions with chain C- Hydrophobic interactions: D:L.945, D:L.946, D:L.946, D:L.949, D:F.976, D:Y.979, D:Y.979, C:F.1003, C:P.1015, C:F.1016, C:F.1016, C:A.1019
- Hydrogen bonds: C:R.1012
CLR.28: 6 residues within 4Å:- Chain C: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.27, CLR.36
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:R.1012, C:F.1016, C:F.1016, C:F.1016
- Hydrogen bonds: C:E.1009
CLR.29: 14 residues within 4Å:- Chain A: V.942, L.945, L.946, L.949, I.972, L.975, F.976, Y.979
- Chain D: F.1003, R.1012, P.1015, F.1016, A.1019
- Ligands: CLR.30
13 PLIP interactions:6 interactions with chain D, 7 interactions with chain A- Hydrophobic interactions: D:F.1003, D:P.1015, D:F.1016, D:F.1016, D:A.1019, A:L.945, A:L.946, A:L.946, A:L.949, A:F.976, A:Y.979, A:Y.979
- Hydrogen bonds: D:R.1012
CLR.30: 6 residues within 4Å:- Chain D: E.1009, R.1012, M.1013, F.1016
- Ligands: CLR.6, CLR.29
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:R.1012, D:F.1016, D:F.1016, D:F.1016
- Hydrogen bonds: D:E.1009
CLR.36: 8 residues within 4Å:- Chain C: E.1009, T.1010, M.1013
- Chain D: L.878, V.898, I.902, F.905
- Ligands: CLR.28
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.878, D:V.898, D:I.902, D:F.905, D:F.905, D:F.905, C:T.1010
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Y. et al., Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-05-08
- Peptides
- TRPM2 chanzyme: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
- 17 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 12 x CLR: CHOLESTEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Y. et al., Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution. Nat.Struct.Mol.Biol. (2024)
- Release Date
- 2024-05-08
- Peptides
- TRPM2 chanzyme: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.