SMTL ID : 8tan.1

CryoEM structure of MFRV-VILP bound to IGF1Rzip

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: N.105, T.107, S.128, L.129, I.130, L.131, D.132, L.206, R.222 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.132

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 10 residues within 4Å: Chain B: N.105, T.107, S.128, L.129, I.130, L.131, D.132, K.191, L.206, R.222 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.132, B:K.191 NAG-NAG.3: 5 residues within 4Å: Chain B: N.592, S.593, Q.596, R.757, V.759 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.757

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: N.592, S.593, Q.596, I.598, V.759 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.596 NAG.5: 1 residues within 4Å: Chain A: N.610 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.610 NAG.6: 2 residues within 4Å: Chain A: T.470, N.577 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.470 NAG.7: 4 residues within 4Å: Chain A: K.373, F.502, N.504, V.505 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.373, A:K.373 NAG.8: 2 residues within 4Å: Chain A: K.17, N.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.21 NAG.9: 2 residues within 4Å: Chain A: H.406, N.408 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.406, A:N.408 NAG.10: 2 residues within 4Å: Chain A: Q.383, N.387 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain B: F.502, N.504 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.504 NAG.12: 2 residues within 4Å: Chain B: N.610, H.778 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.610 NAG.13: 1 residues within 4Å: Chain B: N.21 No protein-ligand interaction detected (PLIP) NAG.14: 3 residues within 4Å: Chain B: N.214, D.215, T.216 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:D.215 Hydrogen bonds: B:D.215, B:T.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chrudinova, M. et al., A viral insulin-like peptide inhibits IGF-1 receptor phosphorylation and regulates IGF1R gene expression. Mol Metab (2024)

Release Date

2024-01-17

Peptides

Insulin-like growth factor 1 receptor: AB
Insulin-like growth factor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Insulin-like growth factor 1 receptor

Insulin-like growth factor

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