SMTL ID : 8th6.1 (1 other biounit)

Crystal Structure of the G3BP1 NTF2-like domain bound to USP10 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-2-2-mer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.8, H.83, A.84 Chain B: Y.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.84 EDO.2: 6 residues within 4Å: Chain A: N.24, Q.25, P.27, F.70, T.71, N.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.25, A:F.70, A:N.72 EDO.3: 4 residues within 4Å: Chain A: H.31, Q.58, K.59, H.62 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: D.46, A.52, D.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.46, A:D.53 EDO.5: 1 residues within 4Å: Chain A: Y.56 No protein-ligand interaction detected (PLIP) EDO.6: 3 residues within 4Å: Chain A: R.13, R.17, I.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.13 EDO.7: 4 residues within 4Å: Chain B: G.35, K.36, Q.58, K.59 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.58, B:K.59 EDO.8: 2 residues within 4Å: Chain B: L.97, R.107 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.107, B:R.107 EDO.9: 3 residues within 4Å: Chain B: R.106, D.135 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.135 EDO.10: 2 residues within 4Å: Chain B: R.106 Ligands: EDO.9 No protein-ligand interaction detected (PLIP) EDO.11: 5 residues within 4Å: Chain A: E.117, K.123, Y.125 Chain D: G.11, D.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.117, A:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Z. et al., Interaction between host G3BP and viral nucleocapsid protein regulates SARS-CoV-2 replication and pathogenicity. Cell Rep (2024)

Release Date

2024-03-20

Peptides

Ras GTPase-activating protein-binding protein 1: AB
Ubiquitin carboxyl-terminal hydrolase 10: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

D
H

Ras GTPase-activating protein-binding protein 1

Ubiquitin carboxyl-terminal hydrolase 10

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