SMTL ID : 8v1l.3 (2 other biounits)

Crystal structure of the NTF2L domain of human G3BP1 in complex with small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-dimer

Ligands

2 x Y9M: N-[(2S)-2-fluoro-4,4-dimethylpentanoyl]-3-hydroxy-L-valyl-(betaS)-beta-methyl-L-phenylalanyl-D-alanyl-N-benzyl-N,O-dimethyl-L-homoserinamide(Non-covalent)

Y9M.1: 9 residues within 4Å: Chain A: P.6, F.15, Q.18, R.32, F.33, N.122, K.123, F.124, Y.125 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.6, A:F.15, A:F.33, A:Y.125 Hydrogen bonds: A:Q.18, A:R.32, A:N.122, A:K.123, A:F.124, A:F.124 Water bridges: A:Q.18 pi-Stacking: A:F.15 Halogen bonds: A:N.122 Y9M.2: 16 residues within 4Å: Chain B: P.6, L.10, V.11, E.14, F.15, Q.18, L.22, M.29, R.32, F.33, Y.34, Q.58, N.122, K.123, F.124, V.126 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:P.6, B:V.11, B:F.15, B:F.15, B:L.22, B:R.32, B:F.33, B:F.124, B:V.126 Hydrogen bonds: B:R.32, B:N.122, B:N.122, B:K.123, B:F.124, B:F.124 pi-Stacking: B:F.15, B:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freibaum, B.D. et al., Identification of small molecule inhibitors of G3BP-driven stress granule formation. J.Cell Biol. (2024)

Release Date

2024-02-14

Peptides

Ras GTPase-activating protein-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Ras GTPase-activating protein-binding protein 1

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