SMTL ID : 8v1l.1 (2 other biounits)

Crystal structure of the NTF2L domain of human G3BP1 in complex with small molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-dimer

Ligands

2 x Y9M: N-[(2S)-2-fluoro-4,4-dimethylpentanoyl]-3-hydroxy-L-valyl-(betaS)-beta-methyl-L-phenylalanyl-D-alanyl-N-benzyl-N,O-dimethyl-L-homoserinamide(Non-covalent)

Y9M.1: 12 residues within 4Å: Chain A: V.11, F.15, Q.18, L.22, R.32, F.33, L.114, N.122, K.123, F.124, Y.125, V.126 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.11, A:F.15, A:L.22, A:R.32, A:F.33, A:F.33, A:L.114, A:N.122, A:F.124, A:Y.125, A:V.126 Hydrogen bonds: A:R.32, A:N.122, A:N.122, A:K.123, A:F.124, A:F.124 Water bridges: A:Q.18 pi-Stacking: A:F.15 Y9M.2: 11 residues within 4Å: Chain B: V.11, E.14, F.15, Q.18, M.29, R.32, F.33, N.122, K.123, F.124, Y.125 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.15, B:F.15, B:F.33, B:F.33, B:K.123, B:F.124, B:Y.125 Hydrogen bonds: B:R.32, B:N.122, B:K.123, B:F.124, B:F.124 Water bridges: B:Q.18, B:Q.18 pi-Stacking: B:F.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freibaum, B.D. et al., Identification of small molecule inhibitors of G3BP-driven stress granule formation. J.Cell Biol. (2024)

Release Date

2024-02-14

Peptides

Ras GTPase-activating protein-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ras GTPase-activating protein-binding protein 1

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