SMTL ID : 8tq9.1

Crystal structure of Fab.S19.8 in complex with MHC-I (H2-Dd)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.190, H.191, R.192 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.192 Salt bridges: A:R.192

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: G.89 Chain C: H.31, R.97, Y.101 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.97, C:R.97, C:Y.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyd, L.F. et al., Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction. J Immunol. (2024)

Release Date

2024-03-20

Peptides

H-2 class I histocompatibility antigen, D-D alpha chain: A
Beta-2-microglobulin: B
Fab.S19.8 Heavy Chain: C
Fab.S19.8 Light Chain: D
Transmembrane protein gp41: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

E
P

H-2 class I histocompatibility antigen, D-D alpha chain

Beta-2-microglobulin

Fab.S19.8 Heavy Chain

Fab.S19.8 Light Chain

Transmembrane protein gp41

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